NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS2748.3 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2748.3 Public Homo sapiens 3 CCDC12 24 110 108 CCDS HistoryNCBI Gene:151903Re-query CCDS DB by CCDS ID:2748.3Re-query CCDS DB by GeneID:151903See the combined annotation on chromosome 3 in Sequence Viewer

Public Note for CCDS 2748.2
The coding region has been updated to shorten the N-terminus to one that is more supported by the available transcript and conservation data.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 2748.3

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000425441.5 ENSP00000416263.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000425441.5Link to Ensembl Protein Viewer:ENSP00000416263.2Re-query CCDS DB by Nucleotide ID:ENST00000425441Re-query CCDS DB by Protein ID:ENSP00000416263
Original member Current member EBI ENST00000683445.1 ENSP00000508011.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000683445.1Link to Ensembl Protein Viewer:ENSP00000508011.1Re-query CCDS DB by Nucleotide ID:ENST00000683445Re-query CCDS DB by Protein ID:ENSP00000508011
Original member Current member NCBI NM_001277074.2 NP_001264003.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001277074.2Link to Protein Sequence:NP_001264003.1Re-query CCDS DB by Nucleotide ID:NM_001277074Re-query CCDS DB by Protein ID:NP_001264003Link to BLAST:NP_001264003.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001264003.1 166 Q8WUD4 166 100% 0 0

Chromosomal Locations for CCDS 2748.3

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 46922057 46922139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 46922236 46922312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 46923329 46923363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 46923607 46923668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 46925456 46925535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 46940998 46941065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 46976637 46976732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (501 nt):
ATGGAGGCAACTACGGCTGGTGTGGGCCGGCTAGAGGAAGAGGCGTTGCGGCGAAAGGAACGGCTGAAGG
CCCTACGGGAGAAAACCGGGCGCAAGGACAAGGAAGATGGGGAGCCAAAGACCAAGCATCTCAGAGAAGA
GGAGGAAGAAGGCGAGAAGCACAGGGAACTTAGGCTGCGGAACTATGTCCCGGAGGATGAGGACCTGAAG
AAGAGGAGGGTGCCCCAGGCCAAACCGGTTGCAGTGGAGGAGAAGGTGAAGGAGCAGCTGGAGGCCGCCA
AGCCCGAGCCCGTCATCGAGGAGGTGGACCTGGCCAACCTCGCTCCTCGGAAGCCTGACTGGGACCTCAA
GAGAGATGTGGCCAAGAAGCTGGAGAAACTAAAAAAGCGGACTCAGAGGGCCATTGCCGAGCTGATCCGT
GAAAGGCTGAAAGGCCAGGAAGACAGCCTAGCCTCTGCAGTGGATGCTGCCACCGAACAAAAGACCTGTG
ACTCCGACTGA

Translation (166 aa):
MEATTAGVGRLEEEALRRKERLKALREKTGRKDKEDGEPKTKHLREEEEEGEKHRELRLRNYVPEDEDLK
KRRVPQAKPVAVEEKVKEQLEAAKPEPVIEEVDLANLAPRKPDWDLKRDVAKKLEKLKKRTQRAIAELIR
ERLKGQEDSLASAVDAATEQKTCDSD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH