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Report for CCDS19042.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19042.1 Public Mus musculus 4 Ccnl2 23 108 98 CCDS HistoryNCBI Gene:56036Re-query CCDS DB by CCDS ID:19042.1Re-query CCDS DB by GeneID:56036See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19042.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030944.10 ENSMUSP00000030944.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030944.10Link to Ensembl Protein Viewer:ENSMUSP00000030944.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000030944Re-query CCDS DB by Protein ID:ENSMUSP00000030944
Original member NCBI NM_207678.1 NP_997561.1 Updated not alive Link to Nucleotide Sequence:NM_207678.1Link to Protein Sequence:NP_997561.1Re-query CCDS DB by Nucleotide ID:NM_207678Re-query CCDS DB by Protein ID:NP_997561
NCBI NM_207678.2 NP_997561.1 Updated not alive Link to Nucleotide Sequence:NM_207678.2Link to Protein Sequence:NP_997561.1Re-query CCDS DB by Nucleotide ID:NM_207678Re-query CCDS DB by Protein ID:NP_997561
Current member NCBI NM_207678.3 NP_997561.1 Accepted alive Link to Nucleotide Sequence:NM_207678.3Link to Protein Sequence:NP_997561.1Re-query CCDS DB by Nucleotide ID:NM_207678Re-query CCDS DB by Protein ID:NP_997561Link to BLAST:NP_997561.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_997561.1 518 Q9JJA7-1 518 100% 0 0

Chromosomal Locations for CCDS 19042.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 155812528 155812809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155813168 155813242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155813459 155813568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155815243 155815363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155817923 155817987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155820329 155820428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155820784 155820888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155820973 155821114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155821812 155821920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155822005 155822097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155823343 155823697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1557 nt):
ATGGCGGCGGCGGCGGCCGGGGCTGCGGGGTTGATGGCTCCGGCGTCGGCGGCCTGCTCTTCCGGCTCGG
CG
GGAGCGGCCCCGGGGTCTCAGGGGGTGCTGATCGGCGACAGGCTCTACTCGGGCGTGCTCATCACCTT
G
GAAAACTGCCTGCTGCCCGACGACAAGCTCCGCTTCACGCCGTCCATGTCGAGCGGCCTCGACGTCGAT
ACG
GAGACGGGACTCCGCGTCGTGGGCTGCGAGCTCATCCAGGCAGCCGGCATCCTGCTCCGCCTGCCGC
AG
GTGGCCATGGCTACAGGGCAGGTGCTGTTCCAGCGGTTCTTTTACACTAAGTCCTTCGTGAAACATTC
C
ATGGAGCATGTGTCCATGGCTTGTGTTCACCTGGCTTCCAAAATAGAAGAGGCTCCGAGACGAATCAGG
GAT
GTCATCAATGTATTCCATCGCCTTCGGCATCTGAGAGAGAAAAAGAAGCCCGTGCCTCTGGTGCTTG
AT
CAAGAGTATGTTAACCTAAAGAACCAGATTATAAAGGCAGAGAGACGGGTTCTCAAGGAGTTGGGCTT
T
TGTGTCCATGTGAAGCACCCTCACAAGATAATCGTTATGTACCTTCAGGTGTTAGAATGTGAGCGTAAT
CAA
CACCTGGTCCAGACTGCATGGAACTACATGAATGACAGCCTTCGCACAGATGTCTTTGTCCGGTTCC
AG
CCTGAAAGCATTGCTTGTGCCTGTATCTACCTTGCTGCCCGGACACTGGAGATCCCTTTACCCAATCG
T
CCACATTGGTTTCTTTTGTTTGGAGCAACTGAAGAAGAAATTCAAGAAATTTGCTTTAAAATCTTGCAG
CTT
TATACACGGAAAAAGGTTGATTTGACGCATCTGGAGAGTGAAGTGGAGAAGAGAAAGCACGCCATTG
AA
GAAGCAAAGGCCCGAGCAAAGGGCCTGCTCCCAGGGACTGCGCCAGGCCTGGACAGTGCTGCGGGGTT
C
TCGCCTGCTCCCAAGCTGGAATCCCCAAAAGAAGGTAAAGGAGGCAAGCCTTCCCCGCCCTCTGGAAAG
AGC
GCCAAACGGAAAATGGAAGGCCCAAAGAAAGCCCAGGGCCACAGCCCTGTAAATGGCTTGCTGAAAG
GG
CAGGAGAGTCGAAGTCAAAGCAGGAGTCGTGAGCAGAGCTACTCAAGGTCCCCATCACGGTCCGCTTC
T
CCAAAGAGAAGGAAAAGTGATAGTGGCTCTACCTCAGGTGGGTCCAAGTCACAGAGTCGTTCTCGGAGC
CGA
AGTGACTCTCCTCCAAGGCAGGTACACCGAGGTGCTCCCTACAAAGGCTCAGAAGTGAGGGGCTCCC
GG
AAATCAAAGGACTGCAAGTACCTCACCCAGAAGCCACACAAGTCTCGTAGCCGGAGCTCCTCTCGTTC
C
CGAAGCCGGTCACGAGAGCGGACGGACAATTCTGGAAAATACAAGAAGAAAAGTCATTACTATAGAGAT
CAA
AGACGTGAGCGCTCAAGGTCATATGAGCGCACAGGCCATCGCTATGAGAGGGACCACCCTGGACACA
GC
AGGCATCGGAGGTGA


Translation (518 aa):
MAAAAAGAAGLMAPASAACSSGSAGAAPGSQGVLIGDRLYSGVLITLENCLLPDDKLRFTPSMSSGLDVD
T
ETGLRVVGCELIQAAGILLRLPQ
VAMATGQVLFQRFFYTKSFVKHSMEHVSMACVHLASKIEEAPRRIR
D
VINVFHRLRHLREK
KKPVPLVLDQEYVNLKNQIIKAERRVLKELGFCVHVKHPHKIIVMYLQVLECERN
Q
HLVQTA
WNYMNDSLRTDVFVRFQPESIACACIYLAARTLEIPLPNRPHWFLLFGATEEEIQEICFKILQ
L
YTRKK
VDLTHLESEVEKRKHAIEEAKARAKGLLPGTAPGLDSAAGFSPAPKLESPKEGKGGKPSPPSGK
S
AKRKMEGPKKAQGHSPVN
GLLKGQESRSQSRSREQSYSRSPSRSASPKRRKSDSGSTSGGSKSQSRSRS
R
SDSPPRQVHRGAPYKGSEVRGSRKSKDCKYLTQKPHKSRSRSSSRSRSRSRERTDNSGKYKKKSHYYRD
Q
RRERSRSYERTGHRYERDHPGHSRHRR




Links Key
 Links to:   History report
  BLAST report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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