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Report for CCDS3960.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3960.1 Public Homo sapiens 5 NDUFS4 24 110 108 CCDS HistoryNCBI Gene:4724Re-query CCDS DB by CCDS ID:3960.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3960.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000296684.10 ENSP00000296684.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000296684.10Link to Ensembl Protein Viewer:ENSP00000296684.5Re-query CCDS DB by Nucleotide ID:ENST00000296684Re-query CCDS DB by Protein ID:ENSP00000296684
Original member Current member NCBI NM_002495.4 NP_002486.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002495.4Link to Protein Sequence:NP_002486.1Re-query CCDS DB by Nucleotide ID:NM_002495Re-query CCDS DB by Protein ID:NP_002486Link to BLAST:NP_002486.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_002486.1 175 O43181 175 100% 0 0

Chromosomal Locations for CCDS 3960.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 53560663 53560760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 53603452 53603530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 53646233 53646405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 53658551 53658624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 53683118 53683221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (528 nt):
ATGGCGGCGGTGTCAATGTCAGTGGTACTGAGGCAGACGTTGTGGCGGAGAAGGGCAGTGGCTGTAGCTG
CCCTTTCCGTTTCCAGGGTTCCGACCAGGTCGTTGAGGACTTCCACATGGAGATTGGCACAGGACCAGAC
TCAAGACACACAACTCATAACAGTTGATGAAAAATTGGATATCACTACTTTAACTGGAGTTCCAGAAGAG
CATATAAAAACTAGAAAAGTCAGGATCTTTGTTCCTGCTCGCAATAACATGCAGTCTGGAGTAAACAACA
CAAAGAAATGGAAGATGGAGTTTGATACCAGAGAGCGATGGGAAAATCCTTTGATGGGTTGGGCATCAAC
GGCTGATCCCTTATCCAACATGGTTCTAACCTTCAGTACTAAAGAAGATGCAGTTTCCTTTGCAGAAAAA
AATGGATGGAGCTATGACATTGAAGAGAGGAAGGTTCCAAAACCCAAGTCCAAGTCTTATGGTGCAAACT
TTTCTTGGAACAAAAGAACAAGAGTATCCACAAAATAG

Translation (175 aa):
MAAVSMSVVLRQTLWRRRAVAVAALSVSRVPTRSLRTSTWRLAQDQTQDTQLITVDEKLDITTLTGVPEE
HIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTADPLSNMVLTFSTKEDAVSFAEK
NGWSYDIEERKVPKPKSKSYGANFSWNKRTRVSTK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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