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Report for CCDS3251.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3251.1 Public Homo sapiens 3 HTR3E 24 110 108 CCDS HistoryNCBI Gene:285242Re-query CCDS DB by CCDS ID:3251.1Re-query CCDS DB by GeneID:285242See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3251.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000335304.6 ENSP00000335511.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000335304.6Link to Ensembl Protein Viewer:ENSP00000335511.2Re-query CCDS DB by Nucleotide ID:ENST00000335304Re-query CCDS DB by Protein ID:ENSP00000335511
Original member Current member NCBI NM_182589.2 NP_872395.2 Accepted alive Link to Nucleotide Sequence:NM_182589.2Link to Protein Sequence:NP_872395.2Re-query CCDS DB by Nucleotide ID:NM_182589Re-query CCDS DB by Protein ID:NP_872395Link to BLAST:NP_872395.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_872395.2 471 A5X5Y0-3 471 100% 0 0

Chromosomal Locations for CCDS 3251.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 184100373 184100651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184101485 184101529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184104182 184104291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184104787 184104956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184105267 184105427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184105765 184105969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184106128 184106343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184106464 184106693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1416 nt):
ATGTTAGCTTTCATTTTATCACGGGCGACCCCACGCCCTGCCTTGGGGCCCCTCTCATATAGGGAGCACA
GGGTTGCTCTCCTTCATCTCACACATTCGATGTCCACTACAGGAAGGGGCGTTACTTTCACCATCAATTG
CTCAGGGTTTGGCCAGCACGGGGCGGATCCCACTGCTCTGAATTCAGTGTTTAATAGAAAGCCCTTCCGT
CCGGTCACCAACATCAGCGTCCCCACCCAAGTCAACATCTCCTTCGCGATGTCTGCCATCCTAGATGTGA
ATGAACAGCTGCACCTCTTGTCATCATTCCTGTGGCTGGAAATGGTTTGGGATAACCCATTTATCAGCTG
GAACCCAGAGGAATGTGAGGGCATCACGAAGATGAGTATGGCAGCCAAGAACCTGTGGCTCCCAGACATT
TTCATCATTGAACTCATGGATGTGGATAAGACCCCAAAAGGCCTCACAGCATATGTAAGTAATGAAGGTC
GCATCAGGTATAAGAAACCCATGAAGGTGGACAGTATCTGTAACCTGGACATCTTCTACTTCCCCTTCGA
CCAGCAGAACTGCACACTCACCTTCAGCTCATTCCTCTACACAGTGGACAGCATGTTGCTGGACATGGAG
AAAGAAGTGTGGGAAATAACAGACGCATCCCGGAACATCCTTCAGACCCATGGAGAATGGGAGCTCCTGG
GCCTCAGCAAGGCCACCGCAAAGTTGTCCAGGGGAGGCAACCTGTATGATCAGATCGTGTTCTATGTGGC
CATCAGGCGCAGGCCCAGTCTCTATGTCATAAACCTTCTCGTGCCCAGTGGCTTTCTGGTTGCCATCGAT
GCCCTCAGCTTCTACCTGCCAGTGAAAAGTGGGAATCGTGTCCCATTCAAGATAACGCTCCTGCTGGGCT
ACAACGTCTTCCTGCTCATGATGAGTGACTTGCTCCCCACCAGTGGCACCCCCCTCATCGGTGTCTACTT
CGCCCTGTGCCTGTCCCTGATGGTGGGCAGCCTGCTGGAGACCATCTTCATCACCCACCTGCTGCACGTG
GCCACCACCCAGCCCCCACCCCTGCCTCGGTGGCTCCACTCCCTGCTGCTCCACTGCAACAGCCCGGGGA
GATGCTGTCCCACTGCGCCCCAGAAGGAAAATAAGGGCCCGGGTCTCACCCCCACCCACCTGCCCGGTGT
GAAGGAGCCAGAGGTATCAGCAGGGCAGATGCCGGGCCCTGCGGAGGCAGAGCTGACAGGGGGCTCAGAA
TGGACAAGGGCCCAGCGGGAACACGAGGCCCAGAAGCAGCACTCAGTGGAGCTGTGGTTGCAGTTCAGCC
ACGCGATGGACGCCATGCTCTTCCGCCTCTACCTGCTCTTCATGGCCTCCTCTATCATCACCGTCATATG
CCTCTGGAACACCTAG

Translation (471 aa):
MLAFILSRATPRPALGPLSYREHRVALLHLTHSMSTTGRGVTFTINCSGFGQHGADPTALNSVFNRKPFR
PVTNISVPTQVNISFAMSAILDVNEQLHLLSSFLWLEMVWDNPFISWNPEECEGITKMSMAAKNLWLPDI
FIIELMDVDKTPKGLTAYVSNEGRIRYKKPMKVDSICNLDIFYFPFDQQNCTLTFSSFLYTVDSMLLDME
KEVWEITDASRNILQTHGEWELLGLSKATAKLSRGGNLYDQIVFYVAIRRRPSLYVINLLVPSGFLVAID
ALSFYLPVKSGNRVPFKITLLLGYNVFLLMMSDLLPTSGTPLIGVYFALCLSLMVGSLLETIFITHLLHV
ATTQPPPLPRWLHSLLLHCNSPGRCCPTAPQKENKGPGLTPTHLPGVKEPEVSAGQMPGPAEAELTGGSE
WTRAQREHEAQKQHSVELWLQFSHAMDAMLFRLYLLFMASSIITVICLWNT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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