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Report for CCDS9076.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9076.1 Public Homo sapiens 12 SCYL2 24 110 108 CCDS HistoryNCBI Gene:55681Re-query CCDS DB by CCDS ID:9076.1Re-query CCDS DB by GeneID:55681See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9076.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000360820.7 ENSP00000354061.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000360820.7Link to Ensembl Protein Viewer:ENSP00000354061.2Re-query CCDS DB by Nucleotide ID:ENST00000360820Re-query CCDS DB by Protein ID:ENSP00000354061
Original member Current member NCBI NM_001317784.2 NP_001304713.1 Accepted alive Link to Nucleotide Sequence:NM_001317784.2Link to Protein Sequence:NP_001304713.1Re-query CCDS DB by Nucleotide ID:NM_001317784Re-query CCDS DB by Protein ID:NP_001304713Link to BLAST:NP_001304713.1
Original member Current member NCBI NM_017988.6 NP_060458.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017988.6Link to Protein Sequence:NP_060458.3Re-query CCDS DB by Nucleotide ID:NM_017988Re-query CCDS DB by Protein ID:NP_060458Link to BLAST:NP_060458.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001304713.1 929 Q6P3W7 929 100% 0 0
NP_060458.3 929 Q6P3W7 929 100% 0 0

Chromosomal Locations for CCDS 9076.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 100282971 100283147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 100291503 100291660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 100298031 100298175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 100311044 100311193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 100312432 100312653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 100313422 100313538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 100314489 100314614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 100315558 100315734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 100317803 100317925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 100323525 100323638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 100326622 100326754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 100329201 100329319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 100334166 100334266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 100335625 100335691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 100335811 100335906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 100337387 100337506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 100338528 100339172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2790 nt):
ATGGAGTCCATGCTTAATAAATTGAAGAGTACTGTTACAAAAGTAACAGCTGATGTCACTAGTGCTGTAA
TG
GGAAATCCTGTCACTAGAGAATTTGATGTTGGTCGACACATTGCCAGTGGTGGCAATGGGCTAGCTTG
G
AAGATTTTTAATGGCACAAAAAAGTCAACAAAGCAGGAAGTGGCAGTTTTTGTCTTTGATAAAAAACTG
ATT
GACAAGTATCAAAAATTTGAAAAGGATCAAATCATTGATTCTCTAAAACGAGGAGTCCAACAGTTAA
CT
CGGCTTCGACACCCTCGACTTCTTACTGTCCAGCATCCTTTAGAAGAATCCAGGGATTGCTTGGCATT
T
TGTACAGAACCAGTTTTTGCCAGTTTAGCCAATGTTCTTGGTAACTGGGAAAATCTACCTTCCCCTATA
TCT
CCAGACATTAAGGATTATAAACTTTATGATGTAGAAACCAAATATGGTTTGCTTCAGGTTTCTGAAG
GA
TTGTCATTCTTGCATAGCAGTGTGAAAATGGTGCATGGAAATATCACTCCTGAAAATATAATTTTGAA
T
AAAAGTGGAGCCTGGAAAATAATGGGTTTTGATTTTTGTGTATCATCAACCAATCCTTCTGAACAAGAG
CCT
AAATTTCCTTGTAAAGAATGGGACCCAAATTTACCTTCATTGTGTCTTCCAAATCCTGAATATTTGG
CT
CCTGAATACATACTTTCTGTGAGCTGTGAAACAGCCAGTGATATGTATTCTTTAGGAACTGTTATGTA
T
GCTGTATTTAATAAAGGGAAACCTATATTTGAAGTCAACAAGCAAGATATTTACAAGAGTTTCAGTAGG
CAG
TTGGATCAGTTGAGTCGTTTAGGATCTAGTTCACTTACAAATATACCTGAGGAAGTTCGTGAACATG
TA
AAGCTACTGTTAAATGTAACTCCGACTGTAAGACCAGATGCAGATCAAATGACAAAGATTCCCTTCTT
T
GATGATGTTGGTGCAGTAACACTGCAATATTTTGATACCTTATTCCAAAGAGATAATCTTCAGAAATCA
CAG
TTTTTCAAAGGACTGCCAAAGGTTCTACCAAAACTGCCCAAGCGTGTCATTGTGCAGAGAATTTTGC
CT
TGTTTGACTTCAGAATTTGTAAACCCTGACATGGTACCTTTTGTTTTGCCCAATGTTCTACTTATTGC
T
GAGGAATGCACCAAAGAAGAATATGTCAAATTAATTCTTCCTGAACTTGGCCCTGTGTTTAAGCAGCAG
GAG
CCAATCCAGATTTTGTTAATTTTCCTACAAAAAATGGATTTGCTACTAACCAAAACCCCTCCTGATG
AG
ATAAAGAACAGTGTTCTACCCATGGTTTACAGAGCACTAGAAGCTCCTTCCATTCAGATCCAGGAGCT
C
TGTCTAAACATCATTCCAACCTTTGCAAATCTTATAGACTACCCATCCATGAAAAACGCTTTGATACCA
AGA
ATTAAAAATGCTTGTCTACAAACATCTTCCCTTGCGGTTCGTGTAAATTCATTAGTGTGCTTAGGAA
AG
ATTTTGGAATACTTGGATAAGTGGTTTGTACTTGATGATATCCTACCCTTCTTACAACAAATTCCATC
C
AAGGAACCTGCGGTCCTCATGGGAATTTTAGGTATTTACAAATGTACTTTTACTCATAAGAAGTTGGGA
ATC
ACCAAAGAGCAGCTGGCCGGAAAAGTGTTGCCTCATCTTATTCCCCTGAGTATTGAAAACAATCTTA
AT
CTTAATCAGTTCAATTCTTTCATTTCCGTCATAAAAGAAATGCTTAATAGATTGGAGTCTGAACATAA
G
ACTAAACTGGAGCAACTTCATATAATGCAAGAACAGCAGAAATCTTTGGATATAGGAAATCAAATGAAT
GTT
TCTGAGGAGATGAAAGTTACAAATATTGGGAATCAGCAAATTGACAAAGTTTTTAACAACATTGGAG
CA
GACCTTCTGACTGGCAGTGAGTCCGAAAATAAAGAGGACGGGTTACAGAATAAACATAAAAGAGCATC
A
CTTACACTTGAAGAAAAACAAAAATTAGCAAAAGAACAAGAGCAGGCACAGAAGCTGAAAAGCCAGCAG
CCT
CTTAAACCCCAAGTGCACACACCTGTTGCTACTGTTAAACAGACTAAGGACTTGACAGACACACTGA
TG
GATAATATGTCATCCTTGACCAGCCTTTCTGTTAGTACCCCTAAATCTTCTGCTTCAAGTACTTTCAC
T
TCTGTTCCTTCCATGGGCATTGGTATGATGTTTTCTACACCAACTGATAATACAAAGAGAAATTTGACA
AAT
GGCCTAAATGCCAATATGGGCTTTCAGACTTCAGGATTCAACATGCCCGTTAATACAAACCAGAACT
TC
TACAGTAGTCCAAGCACAGTTGGAGTGACCAAGATGACTCTGGGAACACCTCCCACTTTGCCAAACTT
C
AATGCTTTGAGTGTTCCTCCTGCTGGTGCAAAGCAGACCCAACAAAGACCCACAGATATGTCTGCCCTT
AAT
AATCTCTTTGGCCCTCAGAAACCCAAAGTTAGCATGAACCAGTTATCACAACAGAAACCAAATCAGT
GG
CTTAATCAGTTTGTACCTCCTCAAGGTTCTCCAACTATGGGCAGTTCAGTAATGGGGACACAGATGAA
C
GTGATAGGACAATCTGCTTTTGGTATGCAGGGTAATCCTTTCTTTAACCCACAGAACTTTGCACAGCCA
CCA
ACTACTATGACCAATAGCAGTTCAGCTAGCAATGATTTAAAAGATCTTTTTGGGTGA


Translation (929 aa):
MESMLNKLKSTVTKVTADVTSAVMGNPVTREFDVGRHIASGGNGLAWKIFNGTKKSTKQEVAVFVFDKKL
I
DKYQKFEKDQIIDSLKRGVQQLTRLRHPRLLTVQHPLEES
RDCLAFCTEPVFASLANVLGNWENLPSPI
S
PDIKDYKLYDVETKYGLLQ
VSEGLSFLHSSVKMVHGNITPENIILNKSGAWKIMGFDFCVSSTNPSEQE
P
KFPCKEWDPNLPSLCLPNPEYLAPEYILSVSCETASDMYSLGTVMYAVFNKGKPIFEVNKQDIYKSFSR
Q
LDQ
LSRLGSSSLTNIPEEVREHVKLLLNVTPTVRPDADQMTKIPFFDDVGAVTLQYFDTLFQRDNLQKS
Q
FFKGLPKVLPKLPK
RVIVQRILPCLTSEFVNPDMVPFVLPNVLLIAEECTKEEYVKLILPELGPVFKQQ
E
PIQ
ILLIFLQKMDLLLTKTPPDEIKNSVLPMVYRALEAPSIQIQELCLNIIPTFANLIDYPSMKNALIP
R
IKNACLQTSSLA
VRVNSLVCLGKILEYLDKWFVLDDILPFLQQIPSKEPAVLMGILGIYKCTFTHKKLG
I
TKEQLAGKVLPHLIPLSIENNLNLNQ
FNSFISVIKEMLNRLESEHKTKLEQLHIMQEQQKSLDIGNQMN
V
SEEMKVTNIGNQ
QIDKVFNNIGADLLTGSESENKEDGLQNKHKRASLTLEEKQKLAKEQEQAQKLKSQQ
P
LKPQVHTPVATVKQ
TKDLTDTLMDNMSSLTSLSVSTPKSSASSTFTSVPSMGIGMMFSTPTDNTKRNLT
N
GLNANMGFQTSGFNMPVNTNQNFYSSPSTVGVTKMTLGTPPTLPNFNALSVPPAGAKQTQQRPTDMSAL
N
NLFGPQKPKVSMNQLSQQKPNQWLNQFVPPQGSPTMGSSVMGTQMNVIGQSAFGMQGNPFFNPQNFAQP
P
TTMTNSSSASNDLKDLFG




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser