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Report for CCDS5249.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5249.1 Public Homo sapiens 6 CLDN20 24 110 108 CCDS HistoryNCBI Gene:49861Re-query CCDS DB by CCDS ID:5249.1Re-query CCDS DB by GeneID:49861See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5249.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000367165.3 ENSP00000356133.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000367165.3Link to Ensembl Protein Viewer:ENSP00000356133.3Re-query CCDS DB by Nucleotide ID:ENST00000367165Re-query CCDS DB by Protein ID:ENSP00000356133
Original member Current member NCBI NM_001001346.3 NP_001001346.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001001346.3Link to Protein Sequence:NP_001001346.1Re-query CCDS DB by Nucleotide ID:NM_001001346Re-query CCDS DB by Protein ID:NP_001001346Link to BLAST:NP_001001346.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001001346.1 219 P56880 219 100% 0 0

Chromosomal Locations for CCDS 5249.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 155275720 155276379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (660 nt):
ATGGCCTCAGCAGGACTCCAGCTCCTTGCTTTCATCCTGGCCTTATCTGGGGTCTCTGGAGTGCTCACAG
CCACTCTGCTGCCCAACTGGAAGGTGAATGTGGATGTGGACTCCAACATCATAACAGCCATTGTACAGCT
GCACGGGCTCTGGATGGACTGTACGTGGTACAGCACTGGGATGTTCAGCTGTGCCCTGAAACACTCCATT
CTGTCCCTCCCCATCCACGTGCAGGCTGCGAGAGCCACCATGGTCCTGGCGTGTGTTCTGTCTGCTTTGG
GGATCTGCACTTCCACAGTAGGAATGAAATGTACTCGCTTAGGAGGGGACAGAGAAACCAAGAGCCATGC
TTCCTTTGCTGGAGGAGTCTGTTTCATGTCTGCAGGAATCTCTAGTTTAATCTCGACAGTGTGGTACACA
AAGGAGATCATAGCAAACTTTCTGGATCTGACAGTTCCAGAAAGCAACAAACATGAACCTGGAGGAGCTA
TCTATATCGGATTCATTTCTGCAATGCTGTTGTTTATCTCTGGCATGATTTTCTGCACCTCCTGTATAAA
AAGGAATCCAGAAGCTAGACTCGACCCACCCACACAGCAGCCTATCTCTAACACACAGCTCGAGAACAAT
TCCACACACAATCTGAAGGATTATGTGTAA

Translation (219 aa):
MASAGLQLLAFILALSGVSGVLTATLLPNWKVNVDVDSNIITAIVQLHGLWMDCTWYSTGMFSCALKHSI
LSLPIHVQAARATMVLACVLSALGICTSTVGMKCTRLGGDRETKSHASFAGGVCFMSAGISSLISTVWYT
KEIIANFLDLTVPESNKHEPGGAIYIGFISAMLLFISGMIFCTSCIKRNPEARLDPPTQQPISNTQLENN
STHNLKDYV


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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