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Report for CCDS72464.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
72464.1 Public Mus musculus X Rnf138rt1 23 108 98 CCDS HistoryNCBI Gene:74264Re-query CCDS DB by CCDS ID:72464.1Re-query CCDS DB by GeneID:74264See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 72464.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000059320.3 ENSMUSP00000139291.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000059320.3Link to Ensembl Protein Viewer:ENSMUSP00000139291.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000059320Re-query CCDS DB by Protein ID:ENSMUSP00000139291
Original member Current member NCBI NM_028842.3 NP_083118.1 Accepted alive Link to Nucleotide Sequence:NM_028842.3Link to Protein Sequence:NP_083118.1Re-query CCDS DB by Nucleotide ID:NM_028842Re-query CCDS DB by Protein ID:NP_083118Link to BLAST:NP_083118.1

Chromosomal Locations for CCDS 72464.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 163760237 163760983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (747 nt):
ATGGCCGAGGAAGAATCTGCCTCCACCACGTCTTATACTGAAGATGATTTCTACTGTCCGATATGCCAAG
AAGTCTTCAAAACGCCAGTTCGGGTCGCGGCCTGTAAGCATGTTTTCTGCAGAAAATGTTTCCTGAGTGC
AATGAAGGAGAGCCGGCTCCACTGCCCCCTGTGCCGTGGAAATGTGACTAGAAGAGAAAGAGCTTGTCCA
GTGAGGGCTGTAGACCTCGAAACCATCATGAGACATTTTCCTGGTAATTGCCGATGCTGTTCCCAGCGCG
TTGAACTCTATCGTATGAGGCAGCACTACAAAACTTGCGAAAAGTACCAGGATGAATTTGGAGTTTCTAC
ATCTGTTTCAAGCTTCCAACAGTCTCCAAACTCCGTGGGCAACAGTAACAACGAGGCACCGGCCTCAGCG
AATGCTGAGGTTTTACAAGAAGAGGAAGAGAACGCAAGCCCACCTGATGAGCCCACCTTCGATTGTCCTC
TGTGTGAAGAAGTAACCATGAGCAGGCAACGTTTGCTGGATCATTGCAACAGCAGCCACCGAGGTCGTGT
CGTTTCAGTCACTTGCCCAATTTGCCTATCTCTTCCATGGGGCGACCCGCCTCAACTCACCAGAAATTTT
GTTAGTCACCTTAATCAGAGGCATCAGTTTGATTACGGAGATTTCGTGAATCTTCAGCTGGATGAGGAAA
CCCAATTTCAGATCGCCATTGAAGAGTCCTTCCACGTCAACATCTAG

Translation (248 aa):
MAEEESASTTSYTEDDFYCPICQEVFKTPVRVAACKHVFCRKCFLSAMKESRLHCPLCRGNVTRRERACP
VRAVDLETIMRHFPGNCRCCSQRVELYRMRQHYKTCEKYQDEFGVSTSVSSFQQSPNSVGNSNNEAPASA
NAEVLQEEEENASPPDEPTFDCPLCEEVTMSRQRLLDHCNSSHRGRVVSVTCPICLSLPWGDPPQLTRNF
VSHLNQRHQFDYGDFVNLQLDEETQFQIAIEESFHVNI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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