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Report for CCDS3607.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3607.1 Public Homo sapiens 4 NKX6-1 24 110 108 CCDS HistoryNCBI Gene:4825Re-query CCDS DB by CCDS ID:3607.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3607.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000295886.5 ENSP00000295886.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000295886.5Link to Ensembl Protein Viewer:ENSP00000295886.3Re-query CCDS DB by Nucleotide ID:ENST00000295886Re-query CCDS DB by Protein ID:ENSP00000295886
Original member Current member NCBI NM_006168.3 NP_006159.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006168.3Link to Protein Sequence:NP_006159.2Re-query CCDS DB by Nucleotide ID:NM_006168Re-query CCDS DB by Protein ID:NP_006159Link to BLAST:NP_006159.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_006159.2 367 P78426 367 100% 0 0

Chromosomal Locations for CCDS 3607.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 84493289 84493549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 84495672 84495844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 84497559 84498228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1104 nt):
ATGTTAGCGGTGGGGGCAATGGAGGGCACCCGGCAGAGCGCATTCCTGCTCAGCAGCCCTCCCCTGGCCG
CCCTGCACAGCATGGCCGAGATGAAGACCCCGCTGTACCCTGCCGCGTATCCCCCGCTGCCTGCCGGCCC
CCCCTCCTCCTCGTCCTCGTCGTCGTCCTCCTCGTCGCCCTCCCCGCCTCTGGGCACCCACAACCCAGGC
GGCCTGAAGCCCCCGGCCACGGGGGGGCTCTCATCCCTCGGCAGCCCCCCGCAGCAGCTCTCGGCCGCCA
CCCCACACGGCATCAACGATATCCTGAGCCGGCCCTCCATGCCCGTGGCCTCGGGGGCCGCCCTGCCCTC
CGCCTCGCCCTCCGGTTCCTCCTCCTCCTCTTCCTCGTCCGCCTCTGCCTCCTCCGCCTCTGCCGCCGCC
GCGGCTGCTGCCGCGGCCGCAGCCGCCGCCTCATCCCCGGCGGGGCTGCTGGCCGGACTGCCACGCTTTA
GCAGCCTGAGCCCGCCGCCGCCGCCGCCCGGGCTCTACTTCAGCCCCAGCGCCGCGGCCGTGGCCGCCGT
GGGCCGGTACCCCAAGCCGCTGGCTGAGCTGCCTGGCCGGACGCCCATCTTCTGGCCCGGAGTGATGCAG
AGCCCGCCCTGGAGGGACGCACGCCTGGCCTGTACCCCTCATCAAGGATCCATTTTGTTGGACAAAGACG
GGAAGAGAAAACACACGAGACCCACTTTTTCCGGACAGCAGATCTTCGCCCTGGAGAAGACTTTCGAACA
AACAAAATACTTGGCGGGGCCCGAGAGGGCTCGTTTGGCCTATTCGTTGGGGATGACAGAGAGTCAGGTC
AAGGTCTGGTTCCAGAACCGCCGGACCAAGTGGAGGAAGAAGCACGCTGCCGAGATGGCCACGGCCAAGA
AGAAGCAGGACTCGGAGACAGAGCGCCTCAAGGGGGCCTCGGAGAACGAGGAAGAGGACGACGACTACAA
TAAGCCTCTGGATCCCAACTCGGACGACGAGAAAATCACGCAGCTGTTGAAGAAGCACAAGTCCAGCAGC
GGCGGCGGCGGCGGCCTCCTACTGCACGCGTCCGAGCCGGAGAGCTCATCCTGA

Translation (367 aa):
MLAVGAMEGTRQSAFLLSSPPLAALHSMAEMKTPLYPAAYPPLPAGPPSSSSSSSSSSSPSPPLGTHNPG
GLKPPATGGLSSLGSPPQQLSAATPHGINDILSRPSMPVASGAALPSASPSGSSSSSSSSASASSASAAA
AAAAAAAAAASSPAGLLAGLPRFSSLSPPPPPPGLYFSPSAAAVAAVGRYPKPLAELPGRTPIFWPGVMQ
SPPWRDARLACTPHQGSILLDKDGKRKHTRPTFSGQQIFALEKTFEQTKYLAGPERARLAYSLGMTESQV
KVWFQNRRTKWRKKHAAEMATAKKKQDSETERLKGASENEEEDDDYNKPLDPNSDDEKITQLLKKHKSSS
GGGGGLLLHASEPESSS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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