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Report for CCDS5196.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5196.1 Public Homo sapiens 6 NMBR 24 110 108 CCDS HistoryNCBI Gene:4829Re-query CCDS DB by CCDS ID:5196.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5196.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000258042.2 ENSP00000258042.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000258042.2Link to Ensembl Protein Viewer:ENSP00000258042.1Re-query CCDS DB by Nucleotide ID:ENST00000258042Re-query CCDS DB by Protein ID:ENSP00000258042
Original member Current member NCBI NM_002511.4 NP_002502.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002511.4Link to Protein Sequence:NP_002502.2Re-query CCDS DB by Nucleotide ID:NM_002511Re-query CCDS DB by Protein ID:NP_002502Link to BLAST:NP_002502.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_002502.2 390 P28336 390 100% 0 0

Chromosomal Locations for CCDS 5196.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 142075648 142076049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 142078555 142078903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 142088237 142088658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1173 nt):
ATGCCCTCTAAGTCTCTTTCCAACCTCTCGGTGACCACCGGCGCGAATGAGAGCGGTTCCGTTCCCGAGG
GGTGGGAAAGGGATTTCCTGCCGGCCTCGGACGGGACCACCACGGAGTTGGTGATCCGCTGTGTGATCCC
GTCCCTCTACCTGCTCATCATCACCGTGGGCTTGCTGGGCAACATCATGCTGGTGAAGATCTTCATCACC
AACAGCGCCATGAGGAGCGTCCCCAACATCTTCATCTCTAACCTGGCGGCCGGGGACTTGCTGCTGCTGC
TCACCTGCGTCCCGGTGGACGCCTCGCGCTACTTCTTCGACGAGTGGATGTTTGGCAAGGTGGGCTGCAA
ACTGATCCCTGTCATCCAGCTCACTTCCGTGGGGGTTTCCGTGTTCACTCTCACTGCCCTCAGCGCCGAC
AGGTACAGAGCCATCGTTAACCCCATGGACATGCAGACGTCAGGGGCATTGCTGCGGACCTGTGTGAAGG
CCATGGGTATCTGGGTGGTCTCCGTGTTGCTGGCAGTTCCCGAAGCGGTGTTTTCAGAAGTGGCTCGCAT
CAGTAGCTTGGATAATAGCAGCTTCACAGCATGTATCCCATACCCTCAAACAGATGAATTACATCCAAAG
ATTCATTCAGTGCTCATTTTCTTGGTCTATTTCCTCATACCACTTGCTATTATTAGCATTTATTATTATC
ATATTGCAAAGACCTTAATTAAAAGCGCACACAATCTTCCTGGAGAATACAATGAACATACCAAAAAACA
GATGGAAACACGGAAACGCCTGGCTAAAATTGTGCTTGTCTTTGTGGGCTGTTTCATCTTCTGTTGGTTT
CCAAACCACATCCTTTACATGTATCGGTCTTTCAACTATAATGAGATTGATCCATCTCTAGGCCACATGA
TTGTCACCTTAGTTGCCCGGGTTCTCAGTTTTGGCAATTCTTGTGTCAACCCATTTGCTCTTTACCTACT
CAGTGAAAGCTTCAGGAGGCATTTCAACAGCCAACTCTGCTGTGGGAGGAAGTCCTATCAAGAGAGAGGA
ACCAGCTACCTACTCAGCTCTTCAGCGGTGCGTATGACATCTCTGAAAAGCAATGCTAAGAACATGGTGA
CCAATTCTGTTTTACTAAATGGGCACAGCATGAAGCAGGAAATGGCACTGTGA

Translation (390 aa):
MPSKSLSNLSVTTGANESGSVPEGWERDFLPASDGTTTELVIRCVIPSLYLLIITVGLLGNIMLVKIFIT
NSAMRSVPNIFISNLAAGDLLLLLTCVPVDASRYFFDEWMFGKVGCKLIPVIQLTSVGVSVFTLTALSAD
RYRAIVNPMDMQTSGALLRTCVKAMGIWVVSVLLAVPEAVFSEVARISSLDNSSFTACIPYPQTDELHPK
IHSVLIFLVYFLIPLAIISIYYYHIAKTLIKSAHNLPGEYNEHTKKQMETRKRLAKIVLVFVGCFIFCWF
PNHILYMYRSFNYNEIDPSLGHMIVTLVARVLSFGNSCVNPFALYLLSESFRRHFNSQLCCGRKSYQERG
TSYLLSSSAVRMTSLKSNAKNMVTNSVLLNGHSMKQEMAL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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