NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS71879.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
71879.1 Public Mus musculus 7 Tnnt1 23 108 98 CCDS HistoryNCBI Gene:21955Re-query CCDS DB by CCDS ID:71879.1Re-query CCDS DB by GeneID:21955See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 71879.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000163710.7 ENSMUSP00000129626.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000163710.7Link to Ensembl Protein Viewer:ENSMUSP00000129626.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000163710Re-query CCDS DB by Protein ID:ENSMUSP00000129626
Original member Current member NCBI NM_001277904.1 NP_001264833.1 Accepted alive Link to Nucleotide Sequence:NM_001277904.1Link to Protein Sequence:NP_001264833.1Re-query CCDS DB by Nucleotide ID:NM_001277904Re-query CCDS DB by Protein ID:NP_001264833Link to BLAST:NP_001264833.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001264833.1 250 O88346-3 250 100% 0 0

Chromosomal Locations for CCDS 71879.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 4504755 4504800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 4507383 4507423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 4507522 4507612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 4508474 4508583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 4509011 4509124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 4509558 4509635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 4509952 4510068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 4510317 4510380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 4512265 4512283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 4513811 4513837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 4514213 4514226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 4514337 4514368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (753 nt):
ATGTCAGACACCGAAGAACAAGAATATGAGGAGGAGCAGGCAGAAGATGAGGAAGCGGTGGAGGAGGAGG
AAGAAGAGCGCCCCAAACCCAGCCGTCCTGTGGTGCCTCCTTTGATTCCCCCGAAGATTCCAGAAGGGGA
GCGTGTGGATTTTGATGACATCCACCGGAAGCGCATGGAGAAAGACTTACTGGAGCTGCAGACGCTCATC
GACGTGCACTTTGAACAGCGGAAAAAGGAGGAGGAAGAGCTCATTGCACTAAAAGACCGCATTGAGAGGC
GACGCGCAGAGAGAGCTGAGCAACAGCGCTTCAGAACGGAAAAGGAGCGAGAACGCCAGGCCAAGCTGGC
GGAGGAGAAGATGCGGAAGGAGGAGGAGGAGGCAAAGAAGAGAGCAGAGGATGACGCCAAGAAGAAGAAA
GTTCTGTCCAACATGGGAGCTCATTTTGGGGGCTACCTGGTCAAGGCAGAACAGAAGCGTGGGAAGCGAC
AGACTGGTCGGGAGATGAAACTCCGGATTCTGTCTGAGAGGAAAAAGCCCTTGAACATCGACTACATGGG
GGAGGACCAGCTCCGGGAAAAGGCCCAGGAGCTGTCAGAATGGATCCACCAGCTGGAATCAGAAAAATTT
GACCTGATGGAGAAGTTGAAGCAACAGAAATATGAGATCAATGTGCTCTACAACCGCATCAGCCACGCCC
AGAAATTCCGAAAGGGGGCTGGGAAGGGTCGAGTTGGAGGCCGCTGGAAGTGA

Translation (250 aa):
MSDTEEQEYEEEQAEDEEAVEEEEEERPKPSRPVVPPLIPPKIPEGERVDFDDIHRKRMEKDLLELQTLI
DVHFEQRKKEEEELIALKDRIERRRAERAEQQRFRTEKERERQAKLAEEKMRKEEEEAKKRAEDDAKKKK
VLSNMGAHFGGYLVKAEQKRGKRQTGREMKLRILSERKKPLNIDYMGEDQLREKAQELSEWIHQLESEKF
DLMEKLKQQKYEINVLYNRISHAQKFRKGAGKGRVGGRWK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH