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Report for CCDS12854.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12854.1 Public Homo sapiens 19 ZNF83 24 110 108 CCDS HistoryNCBI Gene:55769Re-query CCDS DB by CCDS ID:12854.1Re-query CCDS DB by GeneID:55769See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12854.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000301096.8 ENSP00000301096.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000301096.8Link to Ensembl Protein Viewer:ENSP00000301096.3Re-query CCDS DB by Nucleotide ID:ENST00000301096Re-query CCDS DB by Protein ID:ENSP00000301096
Original member Current member EBI ENST00000545872.1 ENSP00000440713.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000545872.1Link to Ensembl Protein Viewer:ENSP00000440713.1Re-query CCDS DB by Nucleotide ID:ENST00000545872Re-query CCDS DB by Protein ID:ENSP00000440713
Original member Current member EBI ENST00000597597.1 ENSP00000472619.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000597597.1Link to Ensembl Protein Viewer:ENSP00000472619.1Re-query CCDS DB by Nucleotide ID:ENST00000597597Re-query CCDS DB by Protein ID:ENSP00000472619
Original member Current member NCBI NM_001105549.2 NP_001099019.1 Accepted alive Link to Nucleotide Sequence:NM_001105549.2Link to Protein Sequence:NP_001099019.1Re-query CCDS DB by Nucleotide ID:NM_001105549Re-query CCDS DB by Protein ID:NP_001099019Link to BLAST:NP_001099019.1
Original member Current member NCBI NM_001105550.2 NP_001099020.1 Accepted alive Link to Nucleotide Sequence:NM_001105550.2Link to Protein Sequence:NP_001099020.1Re-query CCDS DB by Nucleotide ID:NM_001105550Re-query CCDS DB by Protein ID:NP_001099020Link to BLAST:NP_001099020.1
Original member Current member NCBI NM_001105551.2 NP_001099021.1 Accepted alive Link to Nucleotide Sequence:NM_001105551.2Link to Protein Sequence:NP_001099021.1Re-query CCDS DB by Nucleotide ID:NM_001105551Re-query CCDS DB by Protein ID:NP_001099021Link to BLAST:NP_001099021.1
Original member Current member NCBI NM_001105552.2 NP_001099022.1 Accepted alive Link to Nucleotide Sequence:NM_001105552.2Link to Protein Sequence:NP_001099022.1Re-query CCDS DB by Nucleotide ID:NM_001105552Re-query CCDS DB by Protein ID:NP_001099022Link to BLAST:NP_001099022.1
Original member Current member NCBI NM_001277945.2 NP_001264874.1 Accepted alive Link to Nucleotide Sequence:NM_001277945.2Link to Protein Sequence:NP_001264874.1Re-query CCDS DB by Nucleotide ID:NM_001277945Re-query CCDS DB by Protein ID:NP_001264874Link to BLAST:NP_001264874.1
Original member Current member NCBI NM_001277946.2 NP_001264875.1 Accepted alive Link to Nucleotide Sequence:NM_001277946.2Link to Protein Sequence:NP_001264875.1Re-query CCDS DB by Nucleotide ID:NM_001277946Re-query CCDS DB by Protein ID:NP_001264875Link to BLAST:NP_001264875.1
Original member Current member NCBI NM_001277947.2 NP_001264876.1 Accepted alive Link to Nucleotide Sequence:NM_001277947.2Link to Protein Sequence:NP_001264876.1Re-query CCDS DB by Nucleotide ID:NM_001277947Re-query CCDS DB by Protein ID:NP_001264876Link to BLAST:NP_001264876.1
Original member Current member NCBI NM_001277948.2 NP_001264877.1 Accepted alive Link to Nucleotide Sequence:NM_001277948.2Link to Protein Sequence:NP_001264877.1Re-query CCDS DB by Nucleotide ID:NM_001277948Re-query CCDS DB by Protein ID:NP_001264877Link to BLAST:NP_001264877.1
Original member Current member NCBI NM_001277949.2 NP_001264878.1 Accepted alive Link to Nucleotide Sequence:NM_001277949.2Link to Protein Sequence:NP_001264878.1Re-query CCDS DB by Nucleotide ID:NM_001277949Re-query CCDS DB by Protein ID:NP_001264878Link to BLAST:NP_001264878.1
Original member Current member NCBI NM_001277951.2 NP_001264880.1 Accepted alive Link to Nucleotide Sequence:NM_001277951.2Link to Protein Sequence:NP_001264880.1Re-query CCDS DB by Nucleotide ID:NM_001277951Re-query CCDS DB by Protein ID:NP_001264880Link to BLAST:NP_001264880.1
Original member Current member NCBI NM_001277952.2 NP_001264881.1 Accepted alive Link to Nucleotide Sequence:NM_001277952.2Link to Protein Sequence:NP_001264881.1Re-query CCDS DB by Nucleotide ID:NM_001277952Re-query CCDS DB by Protein ID:NP_001264881Link to BLAST:NP_001264881.1
Original member Current member NCBI NM_001348015.2 NP_001334944.1 Accepted alive Link to Nucleotide Sequence:NM_001348015.2Link to Protein Sequence:NP_001334944.1Re-query CCDS DB by Nucleotide ID:NM_001348015Re-query CCDS DB by Protein ID:NP_001334944Link to BLAST:NP_001334944.1
Original member Current member NCBI NM_001348016.2 NP_001334945.1 Accepted alive Link to Nucleotide Sequence:NM_001348016.2Link to Protein Sequence:NP_001334945.1Re-query CCDS DB by Nucleotide ID:NM_001348016Re-query CCDS DB by Protein ID:NP_001334945Link to BLAST:NP_001334945.1
Original member Current member NCBI NM_001348017.2 NP_001334946.1 Accepted alive Link to Nucleotide Sequence:NM_001348017.2Link to Protein Sequence:NP_001334946.1Re-query CCDS DB by Nucleotide ID:NM_001348017Re-query CCDS DB by Protein ID:NP_001334946Link to BLAST:NP_001334946.1
Original member Current member NCBI NM_001348018.2 NP_001334947.1 Accepted alive Link to Nucleotide Sequence:NM_001348018.2Link to Protein Sequence:NP_001334947.1Re-query CCDS DB by Nucleotide ID:NM_001348018Re-query CCDS DB by Protein ID:NP_001334947Link to BLAST:NP_001334947.1
Original member Current member NCBI NM_001348019.2 NP_001334948.1 Accepted alive Link to Nucleotide Sequence:NM_001348019.2Link to Protein Sequence:NP_001334948.1Re-query CCDS DB by Nucleotide ID:NM_001348019Re-query CCDS DB by Protein ID:NP_001334948Link to BLAST:NP_001334948.1
Original member Current member NCBI NM_018300.4 NP_060770.3 Accepted alive Link to Nucleotide Sequence:NM_018300.4Link to Protein Sequence:NP_060770.3Re-query CCDS DB by Nucleotide ID:NM_018300Re-query CCDS DB by Protein ID:NP_060770Link to BLAST:NP_060770.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001099019.1 516 P51522-1 516 100% 0 0
NP_001099020.1 516 P51522-1 516 100% 0 0
NP_001099021.1 516 P51522-1 516 100% 0 0
NP_001099022.1 516 P51522-1 516 100% 0 0
NP_001264874.1 516 P51522-1 516 100% 0 0
NP_001264875.1 516 P51522-1 516 100% 0 0
NP_001264876.1 516 P51522-1 516 100% 0 0
NP_001264877.1 516 P51522-1 516 100% 0 0
NP_001264878.1 516 P51522-1 516 100% 0 0
NP_001264880.1 516 P51522-1 516 100% 0 0
NP_001264881.1 516 P51522-1 516 100% 0 0
NP_001334944.1 516 P51522-1 516 100% 0 0
NP_001334945.1 516 P51522-1 516 100% 0 0
NP_001334946.1 516 P51522-1 516 100% 0 0
NP_001334947.1 516 P51522-1 516 100% 0 0
NP_001334948.1 516 P51522-1 516 100% 0 0
NP_060770.3 516 P51522-1 516 100% 0 0

Chromosomal Locations for CCDS 12854.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 52613014 52614564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1551 nt):
ATGCATGGGAGAAAGGATGATGCACAAAAGCAGCCTGTTAAAAATCAGCTTGGATTAAACCCGCAGTCAC
ATCTACCAGAACTGCAGCTATTTCAAGCTGAAGGGAAAATATATAAATATGATCACATGGAAAAATCTGT
CAACAGTAGTTCCTTAGTTTCCCCACCCCAACGTATTTCTTCTACTGTCAAAACCCACATTTCTCATACA
TATGAATGTAATTTTGTGGATTCATTATTCACACAAAAAGAGAAAGCAAATATTGGGACAGAACACTACA
AATGTAGTGAGCGTGGCAAGGCCTTTCATCAAGGCTTACATTTTACTATACATCAAATAATCCATACTAA
AGAGACGCAATTTAAATGTGATATATGTGGCAAGATCTTCAATAAAAAATCAAACCTTGCAAGTCATCAA
AGAATTCATACTGGAGAGAAGCCATATAAATGTAATGAATGTGGCAAGGTCTTCCATAATATGTCACACC
TTGCACAGCATCGCAGGATTCATACTGGAGAGAAACCATATAAATGTAATGAATGTGGCAAGGTCTTTAA
TCAAATTTCACACCTTGCACAACATCAAAGAATTCATACCGGAGAGAAACCTTATAAATGTAATGAATGT
GGAAAGGTCTTCCATCAAATTTCACACCTTGCACAACATCGGACAATTCATACTGGAGAAAAACCTTACG
AATGTAACAAATGTGGCAAGGTGTTCAGTCGCAATTCCTACCTTGTACAACATCTGATCATTCATACTGG
AGAGAAACCTTACAGATGTAATGTATGTGGAAAGGTCTTCCATCATATTTCACACCTTGCACAACATCAG
AGAATCCACACTGGAGAGAAACCTTACAAATGTAATGAGTGTGGCAAGGTCTTCAGTCACAAGTCATCCC
TAGTAAATCACTGGAGAATTCATACTGGAGAGAAACCTTACAAATGTAATGAGTGTGGCAAGGTCTTCAG
TCACAAGTCATCCCTAGTAAATCACTGGAGAATCCACACTGGAGAGAAACCTTACAAATGTAATGAATGT
GGCAAGGTCTTCAGTCGCAATTCATACCTTGCCCAACATCTGATAATTCATGCCGGTGAGAAACCTTATA
AGTGTGATGAATGTGACAAAGCATTCAGTCAAAATTCACATCTTGTACAACATCACAGAATCCATACTGG
AGAGAAACCTTACAAATGTGATGAATGTGGCAAAGTCTTCAGTCAAAATTCATACCTTGCATATCATTGG
AGAATTCATACTGGAGAAAAAGCTTATAAATGTAATGAATGTGGGAAGGTCTTCGGTCTAAACTCATCCC
TAGCACATCATCGGAAAATTCACACTGGAGAGAAACCTTTCAAATGTAATGAATGTGGCAAAGCTTTTAG
TATGCGTTCAAGCCTCACTAATCATCATGCGATCCACACTGGAGAGAAACATTTCAAATGTAATGAATGT
GGCAAACTCTTCCGCGACAATTCATATCTTGTACGTCATCAGAGATTTCATGCCGGAAAGAAATCTAACA
CATGTAATTAA

Translation (516 aa):
MHGRKDDAQKQPVKNQLGLNPQSHLPELQLFQAEGKIYKYDHMEKSVNSSSLVSPPQRISSTVKTHISHT
YECNFVDSLFTQKEKANIGTEHYKCSERGKAFHQGLHFTIHQIIHTKETQFKCDICGKIFNKKSNLASHQ
RIHTGEKPYKCNECGKVFHNMSHLAQHRRIHTGEKPYKCNECGKVFNQISHLAQHQRIHTGEKPYKCNEC
GKVFHQISHLAQHRTIHTGEKPYECNKCGKVFSRNSYLVQHLIIHTGEKPYRCNVCGKVFHHISHLAQHQ
RIHTGEKPYKCNECGKVFSHKSSLVNHWRIHTGEKPYKCNECGKVFSHKSSLVNHWRIHTGEKPYKCNEC
GKVFSRNSYLAQHLIIHAGEKPYKCDECDKAFSQNSHLVQHHRIHTGEKPYKCDECGKVFSQNSYLAYHW
RIHTGEKAYKCNECGKVFGLNSSLAHHRKIHTGEKPFKCNECGKAFSMRSSLTNHHAIHTGEKHFKCNEC
GKLFRDNSYLVRHQRFHAGKKSNTCN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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