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Report for CCDS33560.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
33560.1 |
Public |
Homo sapiens |
21 |
SH3BGR |
24 |
110 |
108 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:6450](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:33560.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:6450](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 21 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 33560.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000380631.5 |
ENSP00000370005.1 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000380631.5](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000370005.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000380631](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000370005](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000380634.5 |
ENSP00000370008.1 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000380634.5](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000370008.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000380634](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000370008](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000380637.7 |
ENSP00000370011.3 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000380637.7](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000370011.3](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000380637](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000370011](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001001713.1 |
NP_001001713.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001001713.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001001713.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001001713](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001001713](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001001713.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001317742.1 |
NP_001304671.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001317742.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001304671.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001317742](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001304671](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001304671.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 33560.1
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
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Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (387 nt): ATGAGAGAGAATGTTCCTGGAGAGAAAAAACCTCAAAATGGGATTCCTTTGCCTCCCCAGATCTTCAATG AGGAGCAGTACTGTGGGGATTTTGACTCTTTCTTCTCTGCAAAAGAAGAGAATATTATTTATTCCTTCCT TGGTTTGGCTCCTCCTCCAGACTCAAAGGGATCAGAGAAGGCTGAAGAAGGTGGAGAAACTGAGGCACAA AAAGAGGGCAGTGAAGATGTGGGCAACCTCCCTGAAGCCCAGGAGAAGAATGAAGAAGAAGGAGAGACAG CCACAGAAGAGACGGAAGAAATAGCCATGGAGGGTGCGGAAGGGGAAGCCGAGGAGGAGGAAGAAACTGC AGAAGGAGAAGAGCCTGGAGAAGACGAAGATTCCTAG
Translation (128 aa): MRENVPGEKKPQNGIPLPPQIFNEEQYCGDFDSFFSAKEENIIYSFLGLAPPPDSKGSEKAEEGGETEAQ KEGSEDVGNLPEAQEKNEEEGETATEETEEIAMEGAEGEAEEEEETAEGEEPGEDEDS
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