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Report for CCDS11539.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11539.1 Public Homo sapiens 17 ATP5MC1 24 110 108 CCDS HistoryNCBI Gene:516Re-query CCDS DB by CCDS ID:11539.1Re-query CCDS DB by GeneID:516See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11539.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000355938.9 ENSP00000348205.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000355938.9Link to Ensembl Protein Viewer:ENSP00000348205.5Re-query CCDS DB by Nucleotide ID:ENST00000355938Re-query CCDS DB by Protein ID:ENSP00000348205
Original member Current member EBI ENST00000393366.7 ENSP00000377033.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000393366.7Link to Ensembl Protein Viewer:ENSP00000377033.2Re-query CCDS DB by Nucleotide ID:ENST00000393366Re-query CCDS DB by Protein ID:ENSP00000377033
Original member Current member NCBI NM_001002027.2 NP_001002027.1 Accepted alive Link to Nucleotide Sequence:NM_001002027.2Link to Protein Sequence:NP_001002027.1Re-query CCDS DB by Nucleotide ID:NM_001002027Re-query CCDS DB by Protein ID:NP_001002027Link to BLAST:NP_001002027.1
Original member Current member NCBI NM_005175.3 NP_005166.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005175.3Link to Protein Sequence:NP_005166.1Re-query CCDS DB by Nucleotide ID:NM_005175Re-query CCDS DB by Protein ID:NP_005166Link to BLAST:NP_005166.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001002027.1 136 P05496 136 100% 0 0
NP_005166.1 136 P05496 136 100% 0 0

Chromosomal Locations for CCDS 11539.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 48893418 48893456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 48894372 48894449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 48895156 48895334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 48895655 48895769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (411 nt):
ATGCAGACCGCCGGGGCATTATTCATTTCTCCAGCTCTGATCCGCTGTTGTACCAGGGGTCTAATCAGGC
CTGTGTCTGCCTCCTTCTTGAATAGCCCAGTGAATTCATCTAAACAGCCTTCCTACAGCAACTTCCCACT
CCAGGTGGCCAGACGGGAGTTCCAGACCAGTGTTGTCTCCCGGGACATTGACACAGCAGCCAAGTTTATT
GGTGCTGGGGCAGCCACAGTTGGTGTGGCTGGTTCAGGGGCTGGCATTGGAACCGTGTTTGGCAGCTTGA
TCATTGGCTATGCCAGGAACCCGTCTCTCAAGCAGCAGCTCTTCTCCTATGCCATTCTTGGCTTTGCCCT
GTCTGAGGCCATGGGGCTTTTCTGTTTGATGGTCGCCTTCCTCATCCTCTTCGCCATGTGA

Translation (136 aa):
MQTAGALFISPALIRCCTRGLIRPVSASFLNSPVNSSKQPSYSNFPLQVARREFQTSVVSRDIDTAAKFI
GAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFAM


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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