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Report for CCDS6164.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6164.1 Public Homo sapiens 8 MOS 24 110 108 CCDS HistoryNCBI Gene:4342Re-query CCDS DB by CCDS ID:6164.1Re-query CCDS DB by GeneID:4342See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6164.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000311923.1 ENSP00000310722.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000311923.1Link to Ensembl Protein Viewer:ENSP00000310722.1Re-query CCDS DB by Nucleotide ID:ENST00000311923Re-query CCDS DB by Protein ID:ENSP00000310722
Original member Current member NCBI NM_005372.1 NP_005363.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005372.1Link to Protein Sequence:NP_005363.1Re-query CCDS DB by Nucleotide ID:NM_005372Re-query CCDS DB by Protein ID:NP_005363Link to BLAST:NP_005363.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005363.1 346 P00540 346 100% 0 0

Chromosomal Locations for CCDS 6164.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 56112942 56113982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1041 nt):
ATGCCCTCGCCCCTGGCCCTACGCCCCTACCTCCGGAGCGAGTTTTCCCCATCGGTGGACGCGCGGCCCT
GCAGCAGTCCCTCAGAGCTACCTGCGAAGCTGCTTCTGGGGGCCACTCTTCCTCGGGCCCCGCGGCTGCC
GCGCCGGCTGGCCTGGTGCTCCATTGACTGGGAGCAGGTGTGCTTGCTGCAGAGGCTGGGAGCTGGAGGG
TTTGGCTCGGTGTACAAGGCGACTTACCGCGGTGTTCCTGTGGCCATAAAGCAAGTGAACAAGTGCACCA
AGAACCGACTAGCATCTCGGCGGAGTTTCTGGGCTGAGCTCAACGTAGCAAGGCTGCGCCACGATAACAT
CGTGCGCGTGGTGGCTGCCAGCACGCGCACGCCCGCAGGGTCCAATAGCCTAGGGACCATCATCATGGAG
TTCGGTGGCAACGTCACTTTACACCAAGTCATCTATGGCGCCGCCGGCCACCCTGAGGGGGACGCAGGGG
AGCCTCACTGCCGCACTGGAGGACAGTTAAGTTTGGGAAAGTGTCTCAAGTACTCACTAGATGTTGTGAA
CGGCCTGCTCTTCCTCCACTCGCAAAGCATTGTGCACTTGGACCTGAAGCCCGCGAACATCTTGATCAGT
GAGCAGGATGTCTGTAAAATTAGTGACTTCGGTTGCTCTGAGAAGTTGGAAGATCTGCTGTGCTTCCAGA
CACCCTCTTACCCTCTAGGAGGCACATACACCCACCGCGCCCCGGAGCTCCTGAAAGGAGAGGGCGTGAC
GCCTAAAGCCGACATTTATTCCTTTGCCATCACTCTCTGGCAAATGACTACCAAGCAGGCGCCGTATTCG
GGGGAGCGGCAGCACATACTGTACGCGGTGGTGGCCTACGACCTGCGCCCGTCCCTCTCCGCTGCCGTCT
TCGAGGACTCGCTCCCCGGGCAGCGCCTTGGGGACGTCATCCAGCGCTGCTGGAGACCCAGCGCGGCGCA
GAGGCCGAGCGCGCGGCTGCTTTTGGTGGATCTCACCTCTTTGAAAGCTGAACTCGGCTGA

Translation (346 aa):
MPSPLALRPYLRSEFSPSVDARPCSSPSELPAKLLLGATLPRAPRLPRRLAWCSIDWEQVCLLQRLGAGG
FGSVYKATYRGVPVAIKQVNKCTKNRLASRRSFWAELNVARLRHDNIVRVVAASTRTPAGSNSLGTIIME
FGGNVTLHQVIYGAAGHPEGDAGEPHCRTGGQLSLGKCLKYSLDVVNGLLFLHSQSIVHLDLKPANILIS
EQDVCKISDFGCSEKLEDLLCFQTPSYPLGGTYTHRAPELLKGEGVTPKADIYSFAITLWQMTTKQAPYS
GERQHILYAVVAYDLRPSLSAAVFEDSLPGQRLGDVIQRCWRPSAAQRPSARLLLVDLTSLKAELG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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