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Report for CCDS10496.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10496.1 Public Homo sapiens 16 OR1F1 24 110 108 CCDS HistoryNCBI Gene:4992Re-query CCDS DB by CCDS ID:10496.1See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10496.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000304646.2 ENSP00000305424.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000304646.2Link to Ensembl Protein Viewer:ENSP00000305424.2Re-query CCDS DB by Nucleotide ID:ENST00000304646Re-query CCDS DB by Protein ID:ENSP00000305424
Original member NCBI NM_001370641.1 NP_001357570.1 Updated not alive Link to Nucleotide Sequence:NM_001370641.1Link to Protein Sequence:NP_001357570.1Re-query CCDS DB by Nucleotide ID:NM_001370641Re-query CCDS DB by Protein ID:NP_001357570
Current member NCBI NM_001370641.2 NP_001357570.1 Accepted alive Link to Nucleotide Sequence:NM_001370641.2Link to Protein Sequence:NP_001357570.1Re-query CCDS DB by Nucleotide ID:NM_001370641Re-query CCDS DB by Protein ID:NP_001357570Link to BLAST:NP_001357570.1
Original member NCBI NM_012360.2 NP_036492.1 Updated not alive Link to Nucleotide Sequence:NM_012360.2Link to Protein Sequence:NP_036492.1Re-query CCDS DB by Nucleotide ID:NM_012360Re-query CCDS DB by Protein ID:NP_036492
Current member NCBI NM_012360.3 NP_036492.1 Accepted alive Link to Nucleotide Sequence:NM_012360.3Link to Protein Sequence:NP_036492.1Re-query CCDS DB by Nucleotide ID:NM_012360Re-query CCDS DB by Protein ID:NP_036492Link to BLAST:NP_036492.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001357570.1 312 O43749 312 100% 0 0
NP_036492.1 312 O43749 312 100% 0 0

Chromosomal Locations for CCDS 10496.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 3204247 3205185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (939 nt):
ATGAGCGGGACAAACCAGTCGAGTGTCTCCGAGTTCCTCCTCCTGGGACTCTCCAGGCAGCCCCAGCAGC
AGCATCTCCTCTTTGTGTTCTTCCTCAGCATGTACCTGGCCACTGTCCTGGGGAACCTGCTCATCATCCT
GTCCGTAAGCATAGACTCCTGCCTGCACACCCCCATGTACTTCTTCCTCAGCAACCTGTCTTTTGTGGAC
ATCTGCTTCTCCTTCACCACCGTCCCCAAGATGCTGGCCAATCACATACTCGAGACTCAGACCATCTCCT
TCTGTGGCTGTCTCACACAGATGTATTTCGTTTTCATGTTCGTGGACATGGACAATTTCCTCCTAGCTGT
GATGGCCTATGACCACTTTGTCGCCGTGTGCCACCCCTTACATTACACAGCAAAGATGACCCATCAGCTC
TGTGCCCTGCTGGTTGCTGGATTATGGGTGGTTGCCAACCTGAATGTCCTTCTGCACACCCTGCTGATGG
CTCCACTCTCATTCTGTGCAGACAATGCCATCACTCACTTCTTCTGCGATGTGACTCCCCTACTGAAACT
CTCCTGCTCAGACACACACCTCAATGAGGTCATAATCCTTAGTGAGGGTGCCCTGGTCATGATCACCCCA
TTTCTTTGCATCCTGGCTTCTTATATGCACATCACCTGCACTGTCCTGAAGGTCCCATCCACAAAGGGAA
GGTGGAAAGCCTTCTCCACCTGTGGTTCTCACCTGGCTGTGGTTCTCCTCTTCTACAGCACCATCATTGC
TGTGTATTTTAACCCTCTGTCCTCCCACTCAGCTGAGAAAGACACTATGGCTACTGTGTTGTATACAGTA
GTGACTCCCATGCTAAACCCTTTCATCTACAGCCTGAGGAACAGGTACTTGAAAGGGGCTCTGAAAAAAG
TAGTTGGCAGGGTGGTGTTTTCTGTCTGA

Translation (312 aa):
MSGTNQSSVSEFLLLGLSRQPQQQHLLFVFFLSMYLATVLGNLLIILSVSIDSCLHTPMYFFLSNLSFVD
ICFSFTTVPKMLANHILETQTISFCGCLTQMYFVFMFVDMDNFLLAVMAYDHFVAVCHPLHYTAKMTHQL
CALLVAGLWVVANLNVLLHTLLMAPLSFCADNAITHFFCDVTPLLKLSCSDTHLNEVIILSEGALVMITP
FLCILASYMHITCTVLKVPSTKGRWKAFSTCGSHLAVVLLFYSTIIAVYFNPLSSHSAEKDTMATVLYTV
VTPMLNPFIYSLRNRYLKGALKKVVGRVVFSV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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