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Report for CCDS1112.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1112.1 Public Homo sapiens 1 RUSC1 24 110 108 CCDS HistoryNCBI Gene:23623Re-query CCDS DB by CCDS ID:1112.1Re-query CCDS DB by GeneID:23623See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1112.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000292254.8 ENSP00000292254.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000292254.8Link to Ensembl Protein Viewer:ENSP00000292254.4Re-query CCDS DB by Nucleotide ID:ENST00000292254Re-query CCDS DB by Protein ID:ENSP00000292254
Original member Current member EBI ENST00000368349.8 ENSP00000357333.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000368349.8Link to Ensembl Protein Viewer:ENSP00000357333.4Re-query CCDS DB by Nucleotide ID:ENST00000368349Re-query CCDS DB by Protein ID:ENSP00000357333
Original member Current member NCBI NM_001278230.2 NP_001265159.1 Accepted alive Link to Nucleotide Sequence:NM_001278230.2Link to Protein Sequence:NP_001265159.1Re-query CCDS DB by Nucleotide ID:NM_001278230Re-query CCDS DB by Protein ID:NP_001265159Link to BLAST:NP_001265159.1
Original member Current member NCBI NM_014328.4 NP_055143.2 Accepted alive Link to Nucleotide Sequence:NM_014328.4Link to Protein Sequence:NP_055143.2Re-query CCDS DB by Nucleotide ID:NM_014328Re-query CCDS DB by Protein ID:NP_055143Link to BLAST:NP_055143.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001265159.1 433 Q9BVN2-2 433 100% 0 0
NP_055143.2 433 Q9BVN2-2 433 100% 0 0

Chromosomal Locations for CCDS 1112.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 155324895 155324943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155325102 155325178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155325316 155325490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155325567 155325672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155325864 155325910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155326580 155327132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155328150 155328275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155330403 155330571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1302 nt):
ATGGCAGAAGCCCAGAGTGGGACTGGTCAGCTGCAGGAGCAGAAGAAAGGTCTTCTGATAGCCGTCAGCG
TCTCCGTTGATAAAATCATCTCGCATTTCGGGGCCGCCCGGAACTTGGTGCAGAAGGCCCAGTTGGGTGA
TAGCCGGCTGAGCCCGGATGTGGGGCACCTGGTGCTGACCACCCTCTGCCCGGCCCTCCACGCCCTGGTG
GCGGACGGGCTGAAGCCTTTCCGGAAGGACCTCATCACCGGGCAGCGCAGGAGCAGCCCCTGGAGCGTGG
TGGAGGCGTCGGTGAAGCCAGGCTCCAGCACCCGCTCCCTTGGAACCCTGTATAGCCAGGTCAGCCGTCT
AGCCCCGCTGAGCAGCAGCCGTAGCCGCTTCCATGCCTTTATCCTGGGCCTCCTCAACACCAAGCAGTTG
GAGCTGTGGTTTTCCAGTCTCCAGGAAGATGCAGGCCTGCTCTCCCTCCTGTACCTGCCAACAGGATTTT
TCTCCCTGGCCCGCGGTGGTTGTCCCTCCCTGTCCACAGAGCTGCTGCTCCTGCTGCAGCCATTGTCGGT
GCTCACTTTCCACCTGGACCTGCTCTTTGAGCACCACCACCACCTGCCCCTGGGCCCACCTCAGGCCCCT
GCCCCTCCAGGCCCACCTCCAGCTCTGCAGCAGACTATGCAAGCCATGCTGCACTTTGGGGGCCGGCTGG
CCCAGAGCCTTCGGGGGACTTCCAAGGAAGCTGCTTCAGACCCCTCTGACTCTCCAAACCTTCCCACACC
AGGGAGCTGGTGGGAGCAGTTGACCCAGGCCTCCCGGGTCTATGCCTCTGGGGGCACTGAGGGCTTTCCT
CTTTCCCGATGGGCACCGGGGCGTCATGGGACTGCAGCTGAAGAAGGTGCACAGGAGAGACCCCTGCCCA
CAGATGAGATGGCACCAGGCAGGGGCCTCTGGTTGGGAAGACTATTTGGAGTGCCTGGGGGCCCCGCAGA
AAATGAGAATGGAGCCCTAAAGTCCAGGAGACCATCTAGCTGGCTGCCCCCGACAGTGAGTGTGTTGGCT
CTTGTGAAGCGGGGGGCACCTCCCGAGATGCCTTCTCCTCAGGAGCTTGAGGCCTCAGCACCCAGGATGG
TGCAAACCCATAGGGCAGTGCGGGCTCTCTGTGATCACACTGCTGCAAGACCTGACCAGTTGAGCTTCCG
GCGTGGGGAAGTGCTGCGTGTCATCACCACAGTGGATGAGGACTGGCTCCGCTGTGGGCGGGATGGCATG
GAGGGTCTGGTGCCTGTGGGGTATACCTCCCTTGTTCTGTAG

Translation (433 aa):
MAEAQSGTGQLQEQKKGLLIAVSVSVDKIISHFGAARNLVQKAQLGDSRLSPDVGHLVLTTLCPALHALV
ADGLKPFRKDLITGQRRSSPWSVVEASVKPGSSTRSLGTLYSQVSRLAPLSSSRSRFHAFILGLLNTKQL
ELWFSSLQEDAGLLSLLYLPTGFFSLARGGCPSLSTELLLLLQPLSVLTFHLDLLFEHHHHLPLGPPQAP
APPGPPPALQQTMQAMLHFGGRLAQSLRGTSKEAASDPSDSPNLPTPGSWWEQLTQASRVYASGGTEGFP
LSRWAPGRHGTAAEEGAQERPLPTDEMAPGRGLWLGRLFGVPGGPAENENGALKSRRPSSWLPPTVSVLA
LVKRGAPPEMPSPQELEASAPRMVQTHRAVRALCDHTAARPDQLSFRRGEVLRVITTVDEDWLRCGRDGM
EGLVPVGYTSLVL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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