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Report for CCDS31513.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31513.1 Public Homo sapiens 11 OR5W2 24 110 108 CCDS HistoryNCBI Gene:390148Re-query CCDS DB by CCDS ID:31513.1Re-query CCDS DB by GeneID:390148See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 31513.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000344514.1 ENSP00000342448.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000344514.1Link to Ensembl Protein Viewer:ENSP00000342448.1Re-query CCDS DB by Nucleotide ID:ENST00000344514Re-query CCDS DB by Protein ID:ENSP00000342448
Original member Current member NCBI NM_001001960.1 NP_001001960.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001001960.1Link to Protein Sequence:NP_001001960.1Re-query CCDS DB by Nucleotide ID:NM_001001960Re-query CCDS DB by Protein ID:NP_001001960Link to BLAST:NP_001001960.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001001960.1 310 Q8NH69 310 100% 0 0

Chromosomal Locations for CCDS 31513.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 55913650 55914582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (933 nt):
ATGGACTGGGAAAATTGCTCCTCATTAACTGATTTTTTTCTCTTGGGAATTACCAATAACCCAGAGATGA
AAGTGACCCTATTTGCTGTATTCTTGGCTGTTTATATCATTAATTTCTCAGCAAATCTTGGAATGATAGT
TTTAATCAGAATGGATTACCAACTTCACACACCAATGTATTTCTTCCTCAGTCATCTGTCTTTCTGTGAT
CTCTGCTATTCTACTGCAACTGGGCCCAAGATGCTGGTAGATCTACTTGCCAAGAACAAGTCAATACCCT
TCTATGGCTGTGCTCTGCAATTCTTGGTCTTCTGTATCTTTGCAGATTCTGAGTGTCTACTGCTGTCAGT
GATGGCCTTTGATCGGTACAAGGCCATCATCAACCCCCTGCTCTATACAGTCAACATGTCTAGCAGAGTG
TGCTATCTACTCTTGACTGGGGTTTATCTGGTGGGAATAGCAGATGCTTTGATACATATGACACTGGCCT
TCCGCCTATGCTTCTGTGGGTCTAATGAGATTAATCATTTCTTCTGTGATATCCCTCCTCTCTTATTACT
CTCTCGCTCAGATACACAGGTCAATGAGTTAGTGTTATTCACCGTCTTTGGTTTTATTGAACTGAGTACC
ATTTCAGGAGTTTTCATTTCTTATTGTTATATCATCCTATCAGTCTTGGAGATACACTCTGCTGAGGGGA
GGTTCAAAGCTCTCTCTACATGCACTTCCCACTTATCTGCGGTTGCAATTTTCCAGGGAACTCTGCTCTT
TATGTATTTCCGGCCAAGTTCTTCCTATTCTCTAGATCAAGATAAAATGACCTCATTGTTTTACACCCTT
GTGGTTCCCATGTTGAACCCCCTGATTTATAGCCTGAGGAACAAGGATGTGAAAGAGGCCCTGAAAAAAC
TGAAAAATAAAATTTTATTTTAA

Translation (310 aa):
MDWENCSSLTDFFLLGITNNPEMKVTLFAVFLAVYIINFSANLGMIVLIRMDYQLHTPMYFFLSHLSFCD
LCYSTATGPKMLVDLLAKNKSIPFYGCALQFLVFCIFADSECLLLSVMAFDRYKAIINPLLYTVNMSSRV
CYLLLTGVYLVGIADALIHMTLAFRLCFCGSNEINHFFCDIPPLLLLSRSDTQVNELVLFTVFGFIELST
ISGVFISYCYIILSVLEIHSAEGRFKALSTCTSHLSAVAIFQGTLLFMYFRPSSSYSLDQDKMTSLFYTL
VVPMLNPLIYSLRNKDVKEALKKLKNKILF


Links Key
 Links to:   History report
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  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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