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Report for CCDS43047.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43047.1 Public Homo sapiens 3 ARPC4 24 110 108 CCDS HistoryNCBI Gene:10093Re-query CCDS DB by CCDS ID:43047.1Re-query CCDS DB by GeneID:10093See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43047.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000397261.8 ENSP00000380431.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000397261.8Link to Ensembl Protein Viewer:ENSP00000380431.2Re-query CCDS DB by Nucleotide ID:ENST00000397261Re-query CCDS DB by Protein ID:ENSP00000380431
Original member Current member NCBI NM_005718.5 NP_005709.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005718.5Link to Protein Sequence:NP_005709.1Re-query CCDS DB by Nucleotide ID:NM_005718Re-query CCDS DB by Protein ID:NP_005709Link to BLAST:NP_005709.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005709.1 168 P59998-1 168 100% 0 0

Chromosomal Locations for CCDS 43047.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 9793122 9793124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 9797659 9797777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 9800185 9800296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 9801661 9801756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 9803843 9804013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 9806210 9806215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (507 nt):
ATGACTGCCACTCTCCGCCCCTACCTGAGTGCCGTGCGGGCCACATTGCAGGCTGCCCTCTGCCTGGAGA
ACTTCTCCTCCCAGGTTGTGGAACGACACAACAAGCCGGAAGTGGAAGTCAGGAGTAGCAAAGAGCTCCT
GTTACAACCTGTGACCATCAGCAGGAATGAGAAGGAAAAGGTTCTGATTGAGGGCTCCATCAACTCTGTC
CGGGTCAGCATTGCTGTGAAACAGGCTGATGAGATCGAGAAGATTTTGTGCCACAAGTTCATGCGCTTCA
TGATGATGCGAGCAGAGAACTTCTTTATCCTTCGAAGGAAGCCTGTGGAGGGGTATGATATCAGCTTTCT
GATCACCAACTTCCACACAGAGCAGATGTACAAACACAAGTTGGTGGACTTTGTGATCCACTTCATGGAG
GAGATTGACAAGGAGATCAGTGAGATGAAGCTGTCAGTCAATGCCCGTGCCCGCATTGTGGCTGAAGAGT
TCCTTAAGAATTTTTAA

Translation (168 aa):
MTATLRPYLSAVRATLQAALCLENFSSQVVERHNKPEVEVRSSKELLLQPVTISRNEKEKVLIEGSINSV
RVSIAVKQADEIEKILCHKFMRFMMMRAENFFILRRKPVEGYDISFLITNFHTEQMYKHKLVDFVIHFME
EIDKEISEMKLSVNARARIVAEEFLKNF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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