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Report for CCDS4076.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4076.1 Public Homo sapiens 5 SPATA9 24 110 108 CCDS HistoryNCBI Gene:83890Re-query CCDS DB by CCDS ID:4076.1Re-query CCDS DB by GeneID:83890See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4076.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000274432.13 ENSP00000274432.8 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000274432.13Link to Ensembl Protein Viewer:ENSP00000274432.8Re-query CCDS DB by Nucleotide ID:ENST00000274432Re-query CCDS DB by Protein ID:ENSP00000274432
Original member Current member EBI ENST00000316087.12 ENSP00000325491.8 Accepted alive Link to Ensembl Transcript Viewer:ENST00000316087.12Link to Ensembl Protein Viewer:ENSP00000325491.8Re-query CCDS DB by Nucleotide ID:ENST00000316087Re-query CCDS DB by Protein ID:ENSP00000325491
Original member Current member NCBI NM_031952.4 NP_114158.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_031952.4Link to Protein Sequence:NP_114158.2Re-query CCDS DB by Nucleotide ID:NM_031952Re-query CCDS DB by Protein ID:NP_114158Link to BLAST:NP_114158.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_114158.2 254 Q9BWV2-1 254 100% 0 0

Chromosomal Locations for CCDS 4076.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 95658623 95658913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 95663953 95664048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 95675412 95675639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 95682528 95682616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 95682794 95682854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (765 nt):
ATGCCAATCAAACCTGTTGGGTGGATATGTGGGCAGGTGTTGAAGAACTTTTCTGGAAGAATCGAGGGGA
TCCAGAAAGCAATCATGGACCTTGTAGATGAGTTTAAAGATGAATTTCCCACCATCCTAAGATTATCACA
GTCTAATCAGAAAAGAGAACCTGCGCAGAAAACATCCAAAATCAGGATGGCTATTGCTTTAGCTAAGATT
AATCGAGCAACATTAATTCGTGGATTAAACAGCATATCCAGATCCTCCAAATCAGTGGCCAAACTTCTGC
ATCCTCAGCTTGCATGCAGACTTTTAGAGCTAAGGGACATATCTGGTCGTCTGCTGAGGGAAGTTAATGC
GCCGAGGCAACCCCTATATAACATTCAGGTCAGAAAGGGTTCTTTGTTTGAAATCATCTCCTTTCCAGCA
AAGACTGCTTTAACTAGCATAATATATGCTTCATATGCAGCACTAATTTATTTGGCAGTCTGTGTTAATG
CTGTGCTGAAGAAGGTAAAGAACATCTTCCAGGAAGAAGAATCCATAAGGCAAAACAGAGAGGAGAGTGA
AAATTGTAGAAAAGCCTTTTCTGAGCCTGTGCTTTCGGAGCCTATGTTTGCTGAAGGTGAAATCAAAGCA
AAACCTTATAGGTCATTGCCGGAGAAGCCAGACATTTCAGATTACCCCAAGCTTCTTGCTAATAAGCAGA
GTAATAACATCCAAGTTTTACATTCTGTGTTTGACCAATCAGCTGAAATGAATGAGCAAATCTGA

Translation (254 aa):
MPIKPVGWICGQVLKNFSGRIEGIQKAIMDLVDEFKDEFPTILRLSQSNQKREPAQKTSKIRMAIALAKI
NRATLIRGLNSISRSSKSVAKLLHPQLACRLLELRDISGRLLREVNAPRQPLYNIQVRKGSLFEIISFPA
KTALTSIIYASYAALIYLAVCVNAVLKKVKNIFQEEESIRQNREESENCRKAFSEPVLSEPMFAEGEIKA
KPYRSLPEKPDISDYPKLLANKQSNNIQVLHSVFDQSAEMNEQI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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