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Report for CCDS28355.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28355.1 Public Mus musculus 16 Sh3bgr 23 108 98 CCDS HistoryNCBI Gene:50795Re-query CCDS DB by CCDS ID:28355.1See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28355.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000048770.15 ENSMUSP00000038110.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000048770.15Link to Ensembl Protein Viewer:ENSMUSP00000038110.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000048770Re-query CCDS DB by Protein ID:ENSMUSP00000038110
Original member Current member EBI ENSMUST00000171181.8 ENSMUSP00000126581.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000171181.8Link to Ensembl Protein Viewer:ENSMUSP00000126581.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000171181Re-query CCDS DB by Protein ID:ENSMUSP00000126581
Original member Current member NCBI NM_015825.2 NP_056640.1 Accepted alive Link to Nucleotide Sequence:NM_015825.2Link to Protein Sequence:NP_056640.1Re-query CCDS DB by Nucleotide ID:NM_015825Re-query CCDS DB by Protein ID:NP_056640Link to BLAST:NP_056640.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_056640.1 214 Q9WUZ7 214 100% 0 0

Chromosomal Locations for CCDS 28355.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 96200704 96200748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 96206482 96206667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 96214013 96214093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 96219489 96219560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 96220499 96220591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 96223801 96223881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 96224474 96224560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (645 nt):
ATGGTTATCAAAGTGTTTGTTGCCACATCTTCTGGGTCCATAGCGATTAGGAAAAAACAGCAAGAAGTGG
TGGGCTTTTTGGAAGCCAATAAAATAGACTTCAAGGAGCTGGACATAGCTGGGGATGAAGACAACAGAAA
GTGGATGAGAGAGAATGTTCCCGGGGAGAAGAAACCTCAGAATGGGATCCCTTTGCCCCCTCAGATCTTC
AATGAAGAGCAGTATTGTGGGGACTTTGACTCCTTCTTCTCGGCAAAAGAAGAAAATATTATTTATTCAT
TCCTTGGTCTGGCTCCCCCTCCTGGGTCAAAGGTGACAAAGTCTGAGGAAGCATCCTCCCTTCCCAATGG
AGATGTAGCAGGAGAGGCAGAGGGTGCTGCAGAGGGAACAGAGAAGGCTGAAAAAAGTGGAGAAAATGAG
GCACAGAAAGAGGACAGTGAAGACACTGGAGAGCTTTCTGAATCCCAAGAGAAGAAGGAAGAAGAGGGAG
AAGACGGAGAAGAGGGAGAAGAGGGAGAAGAGAGAGAAGAGGGAGGAGAGGGAGAGACAACAGGAGAGAC
GGAAGAGGCACCAGAGGAAGGAGCAGGGGGGGAAGCTGAAGAAGAGGAGCCTGAGGAAGAGGCAGGAGAA
GGGGAAGATTCTTAG

Translation (214 aa):
MVIKVFVATSSGSIAIRKKQQEVVGFLEANKIDFKELDIAGDEDNRKWMRENVPGEKKPQNGIPLPPQIF
NEEQYCGDFDSFFSAKEENIIYSFLGLAPPPGSKVTKSEEASSLPNGDVAGEAEGAAEGTEKAEKSGENE
AQKEDSEDTGELSESQEKKEEEGEDGEEGEEGEEREEGGEGETTGETEEAPEEGAGGEAEEEEPEEEAGE
GEDS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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