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Report for CCDS7803.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7803.1 Public Homo sapiens 11 RNF141 24 110 108 CCDS HistoryNCBI Gene:50862Re-query CCDS DB by CCDS ID:7803.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7803.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000265981.7 ENSP00000265981.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000265981.7Link to Ensembl Protein Viewer:ENSP00000265981.2Re-query CCDS DB by Nucleotide ID:ENST00000265981Re-query CCDS DB by Protein ID:ENSP00000265981
Original member Current member NCBI NM_016422.4 NP_057506.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016422.4Link to Protein Sequence:NP_057506.2Re-query CCDS DB by Nucleotide ID:NM_016422Re-query CCDS DB by Protein ID:NP_057506Link to BLAST:NP_057506.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057506.2 230 Q8WVD5-1 230 100% 0 0

Chromosomal Locations for CCDS 7803.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 10514916 10515066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 10519034 10519141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 10525192 10525373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 10530643 10530751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 10534016 10534158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (693 nt):
ATGGGACAGCAAATTTCGGATCAGACACAGTTGGTTATTAACAAGTTACCAGAAAAAGTAGCAAAACATG
TTACGTTGGTTCGAGAGAGTGGCTCCTTAACTTATGAAGAATTTCTTGGGAGAGTAGCTGAGCTTAATGA
TGTAACGGCTAAAGTGGCTTCTGGCCAGGAAAAACATCTTCTCTTTGAGGTACAACCTGGGTCTGATTCC
TCTGCTTTTTGGAAAGTGGTTGTACGGGTGGTCTGTACCAAGATTAACAAAAGCAGTGGCATTGTGGAGG
CATCACGGATCATGAATTTATACCAGTTTATTCAACTTTATAAAGATATCACAAGTCAAGCAGCAGGAGT
ATTGGCACAGAGCTCCACCTCTGAAGAACCTGATGAAAACTCATCCTCTGTAACATCTTGTCAGGCTAGT
CTTTGGATGGGAAGGGTGAAGCAGCTGACCGATGAGGAGGAGTGTTGTATCTGTATGGATGGGCGGGCTG
ACCTCATCCTGCCTTGTGCTCACAGCTTTTGTCAGAAGTGTATTGATAAATGGAGTGATCGACACAGGAA
TTGCCCTATTTGTCGCCTACAGATGACTGGAGCAAATGAATCTTGGGTGGTATCAGATGCACCCACTGAA
GATGATATGGCTAACTATATTCTTAACATGGCTGATGAGGCAGGCCAGCCCCACAGGCCATGA

Translation (230 aa):
MGQQISDQTQLVINKLPEKVAKHVTLVRESGSLTYEEFLGRVAELNDVTAKVASGQEKHLLFEVQPGSDS
SAFWKVVVRVVCTKINKSSGIVEASRIMNLYQFIQLYKDITSQAAGVLAQSSTSEEPDENSSSVTSCQAS
LWMGRVKQLTDEEECCICMDGRADLILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGANESWVVSDAPTE
DDMANYILNMADEAGQPHRP


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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