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Report for CCDS3765.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3765.1 Public Homo sapiens 4 SMAD1 24 110 108 CCDS HistoryNCBI Gene:4086Re-query CCDS DB by CCDS ID:3765.1Re-query CCDS DB by GeneID:4086See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3765.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000302085.9 ENSP00000305769.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000302085.9Link to Ensembl Protein Viewer:ENSP00000305769.4Re-query CCDS DB by Nucleotide ID:ENST00000302085Re-query CCDS DB by Protein ID:ENSP00000305769
Original member Current member EBI ENST00000394092.6 ENSP00000377652.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000394092.6Link to Ensembl Protein Viewer:ENSP00000377652.2Re-query CCDS DB by Nucleotide ID:ENST00000394092Re-query CCDS DB by Protein ID:ENSP00000377652
Original member Current member EBI ENST00000515385.1 ENSP00000426568.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000515385.1Link to Ensembl Protein Viewer:ENSP00000426568.1Re-query CCDS DB by Nucleotide ID:ENST00000515385Re-query CCDS DB by Protein ID:ENSP00000426568
Original member Current member NCBI NM_001003688.1 NP_001003688.1 Accepted alive Link to Nucleotide Sequence:NM_001003688.1Link to Protein Sequence:NP_001003688.1Re-query CCDS DB by Nucleotide ID:NM_001003688Re-query CCDS DB by Protein ID:NP_001003688Link to BLAST:NP_001003688.1
Original member Current member NCBI NM_001354811.1 NP_001341740.1 Accepted alive Link to Nucleotide Sequence:NM_001354811.1Link to Protein Sequence:NP_001341740.1Re-query CCDS DB by Nucleotide ID:NM_001354811Re-query CCDS DB by Protein ID:NP_001341740Link to BLAST:NP_001341740.1
Original member Current member NCBI NM_001354812.1 NP_001341741.1 Accepted alive Link to Nucleotide Sequence:NM_001354812.1Link to Protein Sequence:NP_001341741.1Re-query CCDS DB by Nucleotide ID:NM_001354812Re-query CCDS DB by Protein ID:NP_001341741Link to BLAST:NP_001341741.1
Original member Current member NCBI NM_001354813.1 NP_001341742.1 Accepted alive Link to Nucleotide Sequence:NM_001354813.1Link to Protein Sequence:NP_001341742.1Re-query CCDS DB by Nucleotide ID:NM_001354813Re-query CCDS DB by Protein ID:NP_001341742Link to BLAST:NP_001341742.1
Original member Current member NCBI NM_001354814.1 NP_001341743.1 Accepted alive Link to Nucleotide Sequence:NM_001354814.1Link to Protein Sequence:NP_001341743.1Re-query CCDS DB by Nucleotide ID:NM_001354814Re-query CCDS DB by Protein ID:NP_001341743Link to BLAST:NP_001341743.1
Original member Current member NCBI NM_001354816.1 NP_001341745.1 Accepted alive Link to Nucleotide Sequence:NM_001354816.1Link to Protein Sequence:NP_001341745.1Re-query CCDS DB by Nucleotide ID:NM_001354816Re-query CCDS DB by Protein ID:NP_001341745Link to BLAST:NP_001341745.1
Original member Current member NCBI NM_001354817.1 NP_001341746.1 Accepted alive Link to Nucleotide Sequence:NM_001354817.1Link to Protein Sequence:NP_001341746.1Re-query CCDS DB by Nucleotide ID:NM_001354817Re-query CCDS DB by Protein ID:NP_001341746Link to BLAST:NP_001341746.1
Original member Current member NCBI NM_005900.3 NP_005891.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005900.3Link to Protein Sequence:NP_005891.1Re-query CCDS DB by Nucleotide ID:NM_005900Re-query CCDS DB by Protein ID:NP_005891Link to BLAST:NP_005891.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001003688.1 465 Q15797-1 465 100% 0 0
NP_001341740.1 465 Q15797-1 465 100% 0 0
NP_001341741.1 465 Q15797-1 465 100% 0 0
NP_001341742.1 465 Q15797-1 465 100% 0 0
NP_001341743.1 465 Q15797-1 465 100% 0 0
NP_001341745.1 465 Q15797-1 465 100% 0 0
NP_001341746.1 465 Q15797-1 465 100% 0 0
NP_005891.1 465 Q15797-1 465 100% 0 0

Chromosomal Locations for CCDS 3765.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 145514614 145515013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 145539804 145540061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 145542582 145542698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 145546703 145546924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 145553784 145554040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 145557791 145557934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1398 nt):
ATGAATGTGACAAGTTTATTTTCCTTTACAAGTCCAGCTGTGAAGAGACTTCTTGGGTGGAAACAGGGCG
ATGAAGAAGAAAAATGGGCAGAGAAAGCTGTTGATGCTTTGGTGAAAAAACTGAAGAAAAAGAAAGGTGC
CATGGAGGAACTGGAAAAGGCCTTGAGCTGCCCAGGGCAACCGAGTAACTGTGTCACCATTCCCCGCTCT
CTGGATGGCAGGCTGCAAGTCTCCCACCGGAAGGGACTGCCTCATGTCATTTACTGCCGTGTGTGGCGCT
GGCCCGATCTTCAGAGCCACCATGAACTAAAACCACTGGAATGCTGTGAGTTTCCTTTTGGTTCCAAGCA
GAAGGAGGTCTGCATCAATCCCTACCACTATAAGAGAGTAGAAAGCCCTGTACTTCCTCCTGTGCTGGTT
CCAAGACACAGCGAATATAATCCTCAGCACAGCCTCTTAGCTCAGTTCCGTAACTTAGGACAAAATGAGC
CTCACATGCCACTCAACGCCACTTTTCCAGATTCTTTCCAGCAACCCAACAGCCACCCGTTTCCTCACTC
TCCCAATAGCAGTTACCCAAACTCTCCTGGGAGCAGCAGCAGCACCTACCCTCACTCTCCCACCAGCTCA
GACCCAGGAAGCCCTTTCCAGATGCCAGCTGATACGCCCCCACCTGCTTACCTGCCTCCTGAAGACCCCA
TGACCCAGGATGGCTCTCAGCCGATGGACACAAACATGATGGCGCCTCCCCTGCCCTCAGAAATCAACAG
AGGAGATGTTCAGGCGGTTGCTTATGAGGAACCAAAACACTGGTGCTCTATTGTCTACTATGAGCTCAAC
AATCGTGTGGGTGAAGCGTTCCATGCCTCCTCCACAAGTGTGTTGGTGGATGGTTTCACTGATCCTTCCA
ACAATAAGAACCGTTTCTGCCTTGGGCTGCTCTCCAATGTTAACCGGAATTCCACTATTGAAAACACCAG
GCGGCATATTGGAAAAGGAGTTCATCTTTATTATGTTGGAGGGGAGGTGTATGCCGAATGCCTTAGTGAC
AGTAGCATCTTTGTGCAAAGTCGGAACTGCAACTACCATCATGGATTTCATCCTACTACTGTTTGCAAGA
TCCCTAGTGGGTGTAGTCTGAAAATTTTTAACAACCAAGAATTTGCTCAGTTATTGGCACAGTCTGTGAA
CCATGGATTTGAGACAGTCTATGAGCTTACAAAAATGTGTACTATACGTATGAGCTTTGTGAAGGGCTGG
GGAGCAGAATACCACCGCCAGGATGTTACTAGCACCCCCTGCTGGATTGAGATACATCTGCACGGCCCCC
TCCAGTGGCTGGATAAAGTTCTTACTCAAATGGGTTCACCTCATAATCCTATTTCATCTGTATCTTAA

Translation (465 aa):
MNVTSLFSFTSPAVKRLLGWKQGDEEEKWAEKAVDALVKKLKKKKGAMEELEKALSCPGQPSNCVTIPRS
LDGRLQVSHRKGLPHVIYCRVWRWPDLQSHHELKPLECCEFPFGSKQKEVCINPYHYKRVESPVLPPVLV
PRHSEYNPQHSLLAQFRNLGQNEPHMPLNATFPDSFQQPNSHPFPHSPNSSYPNSPGSSSSTYPHSPTSS
DPGSPFQMPADTPPPAYLPPEDPMTQDGSQPMDTNMMAPPLPSEINRGDVQAVAYEEPKHWCSIVYYELN
NRVGEAFHASSTSVLVDGFTDPSNNKNRFCLGLLSNVNRNSTIENTRRHIGKGVHLYYVGGEVYAECLSD
SSIFVQSRNCNYHHGFHPTTVCKIPSGCSLKIFNNQEFAQLLAQSVNHGFETVYELTKMCTIRMSFVKGW
GAEYHRQDVTSTPCWIEIHLHGPLQWLDKVLTQMGSPHNPISSVS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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