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Report for CCDS33563.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33563.1 Public Homo sapiens 21 PCP4 24 110 108 CCDS HistoryNCBI Gene:5121Re-query CCDS DB by CCDS ID:33563.1See the combined annotation on chromosome 21 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 33563.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000328619.10 ENSP00000329403.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000328619.10Link to Ensembl Protein Viewer:ENSP00000329403.5Re-query CCDS DB by Nucleotide ID:ENST00000328619Re-query CCDS DB by Protein ID:ENSP00000329403
Original member Current member NCBI NM_006198.3 NP_006189.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006198.3Link to Protein Sequence:NP_006189.2Re-query CCDS DB by Nucleotide ID:NM_006198Re-query CCDS DB by Protein ID:NP_006189Link to BLAST:NP_006189.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_006189.2 62 P48539 62 100% 0 0

Chromosomal Locations for CCDS 33563.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 21 (NC_000021.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21See the combined annotation on chromosome 21 in Sequence Viewer

Chromosome Start Stop Links
21 39867502 39867510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 39898476 39898527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 39928984 39929111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (189 nt):
ATGAGTGAGCGACAAGGTGCTGGGGCAACCAATGGAAAAGACAAGACATCTGGTGAAAATGATGGACAGA
AGAAAGTTCAAGAAGAATTTGACATTGACATGGATGCACCAGAGACAGAACGTGCAGCGGTGGCCATTCA
GTCTCAGTTCAGAAAATTCCAGAAGAAGAAGGCTGGGTCTCAGTCCTAG

Translation (62 aa):
MSERQGAGATNGKDKTSGENDGQKKVQEEFDIDMDAPETERAAVAIQSQFRKFQKKKAGSQS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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