NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS8547.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8547.1 Public Homo sapiens 12 MRPL51 24 110 108 CCDS HistoryNCBI Gene:51258Re-query CCDS DB by CCDS ID:8547.1See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8547.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000229238.5 ENSP00000229238.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000229238.5Link to Ensembl Protein Viewer:ENSP00000229238.3Re-query CCDS DB by Nucleotide ID:ENST00000229238Re-query CCDS DB by Protein ID:ENSP00000229238
Original member Current member NCBI NM_016497.4 NP_057581.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016497.4Link to Protein Sequence:NP_057581.2Re-query CCDS DB by Nucleotide ID:NM_016497Re-query CCDS DB by Protein ID:NP_057581Link to BLAST:NP_057581.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057581.2 128 Q4U2R6 128 100% 0 0

Chromosomal Locations for CCDS 8547.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 6492271 6492467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 6492862 6492972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 6493058 6493136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (387 nt):
ATGGCAGGGAACCTCTTATCCGGGGCAGGTAGGCGCCTGTGGGACTGGGTGCCTCTGGCGTGCAGAAGCT
TCTCTCTTGGTGTGCCTAGATTGATCGGTATAAGGCTCACTCTCCCGCCCCCCAAAGTGGTTGATCGTTG
GAACGAGAAAAGGGCCATGTTCGGAGTGTATGACAACATCGGGATCCTGGGAAACTTTGAAAAGCACCCC
AAAGAACTGATCAGGGGGCCCATATGGCTTCGAGGTTGGAAAGGGAATGAATTGCAACGTTGTATCCGAA
AGAGGAAAATGGTTGGAAGTAGAATGTTCGCTGATGACCTGCACAACCTTAATAAACGCATCCGCTATCT
CTACAAACACTTTAACCGACATGGGAAGTTTCGATAG

Translation (128 aa):
MAGNLLSGAGRRLWDWVPLACRSFSLGVPRLIGIRLTLPPPKVVDRWNEKRAMFGVYDNIGILGNFEKHP
KELIRGPIWLRGWKGNELQRCIRKRKMVGSRMFADDLHNLNKRIRYLYKHFNRHGKFR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH