NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS11951.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11951.2 Public Homo sapiens 18 MEX3C 24 110 108 CCDS HistoryNCBI Gene:51320Re-query CCDS DB by CCDS ID:11951.2See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 11951.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000406189.4 ENSP00000385610.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000406189.4Link to Ensembl Protein Viewer:ENSP00000385610.3Re-query CCDS DB by Nucleotide ID:ENST00000406189Re-query CCDS DB by Protein ID:ENSP00000385610
Original member Current member NCBI NM_016626.5 NP_057710.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016626.5Link to Protein Sequence:NP_057710.3Re-query CCDS DB by Nucleotide ID:NM_016626Re-query CCDS DB by Protein ID:NP_057710Link to BLAST:NP_057710.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057710.3 659 Q5U5Q3 659 100% 0 0

Chromosomal Locations for CCDS 11951.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 51176351 51177576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 51196567 51197320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1980 nt):
ATGCCCAGCGGCAGCTCCGCGGCCCTGGCCCTGGCGGCGGCCCCGGCCCCCCTGCCGCAGCCGCCCCCGC
CGCCGCCGCCGCCACCGCCGCCTCTGCCGCCGCCCTCGGGCGGCCCGGAGCTCGAGGGGGACGGGCTCCT
GCTGAGGGAGCGCTTGGCCGCGCTAGGCCTCGACGACCCCAGCCCGGCGGAGCCCGGCGCCCCGGCGCTT
CGGGCCCCGGCAGCGGCGGCGCAGGGCCAGGCCCGGCGGGCGGCGGAGCTGTCTCCAGAGGAGCGGGCTC
CGCCCGGCCGGCCCGGGGCCCCGGAGGCGGCCGAGCTGGAGCTGGAAGAGGACGAGGAGGAGGGGGAGGA
AGCGGAGCTGGACGGAGACCTGCTGGAGGAGGAGGAGCTGGAGGAAGCAGAGGAGGAGGACCGGTCGTCG
CTGCTGCTGCTGTCGCCGCCCGCGGCCACCGCCTCTCAGACCCAGCAGATCCCGGGCGGGTCCCTGGGGT
CTGTGCTGCTGCCAGCCGCCAGGTTCGATGCCCGGGAGGCGGCGGCCGCGGCGGCGGCGGCGGGGGTGCT
GTACGGAGGGGACGATGCCCAGGGCATGATGGCGGCGATGCTGTCCCACGCCTACGGCCCCGGCGGTTGT
GGGGCGGCGGCGGCCGCCCTGAACGGGGAGCAGGCGGCCCTGCTCCGGAGAAAGAGCGTCAACACCACCG
AGTGCGTCCCGGTGCCCAGCTCCGAGCACGTCGCCGAGATCGTCGGCCGCCAGGGTTGTAAAATTAAAGC
ACTGAGAGCCAAGACAAACACGTATATCAAGACTCCTGTTCGTGGTGAAGAGCCCATTTTTGTTGTCACT
GGAAGGAAAGAAGATGTTGCCATGGCCAAAAGAGAGATCCTCTCAGCTGCAGAGCACTTCTCCATGATTC
GTGCATCTCGAAACAAAAATGGGCCTGCCCTGGGAGGATTATCATGTAGTCCTAATCTGCCCGGTCAAAC
CACCGTCCAAGTCAGGGTCCCTTATCGTGTGGTAGGATTAGTGGTTGGACCCAAAGGAGCAACTATTAAA
AGAATTCAGCAGCAGACCCACACCTACATAGTAACTCCGAGCAGAGATAAGGAACCTGTCTTTGAAGTGA
CAGGGATGCCTGAAAATGTTGACCGAGCACGGGAAGAAATAGAAATGCATATTGCCATGCGTACAGGAAA
CTATATAGAGCTCAATGAAGAGAATGATTTCCATTACAATGGTACCGATGTAAGCTTTGAAGGTGGCACT
CTTGGCTCTGCGTGGCTCTCCTCCAATCCTGTTCCTCCTAGCCGCGCAAGAATGATATCCAATTATCGAA
ATGATAGTTCCAGTTCTCTAGGAAGTGGCTCTACAGATTCCTACTTTGGAAGCAATAGGCTGGCTGACTT
TAGTCCAACAAGCCCATTTAGCACAGGAAACTTCTGGTTTGGAGATACACTACCATCTGTAGGCTCAGAA
GACCTAGCAGTTGACTCTCCTGCCTTTGACTCTTTACCAACATCTGCTCAAACTATCTGGACTCCATTTG
AACCAGTTAACCCACTCTCTGGCTTTGGGAGTGATCCTTCTGGTAACATGAAGACTCAGCGCAGAGGAAG
TCAGCCATCTACTCCTCGTCTGTCTCCTACATTTCCTGAGAGCATAGAACATCCACTTGCTCGGAGGGTT
AGGAGCGACCCACCTAGTACAGGCAACCATGTTGGCCTTCCAATATATATCCCTGCTTTTTCTAATGGTA
CCAATAGTTACTCCTCTTCCAATGGTGGTTCCACCTCTAGCTCACCTCCAGAATCAAGACGAAAGCACGA
CTGTGTGATTTGCTTTGAGAATGAGGTTATTGCTGCCCTAGTTCCATGTGGCCACAACCTCTTCTGCATG
GAATGTGCCAACAAGATCTGTGAAAAGAGAACGCCATCATGTCCAGTTTGCCAGACAGCTGTTACTCAGG
CAATCCAAATTCACTCTTAA

Translation (659 aa):
MPSGSSAALALAAAPAPLPQPPPPPPPPPPPLPPPSGGPELEGDGLLLRERLAALGLDDPSPAEPGAPAL
RAPAAAAQGQARRAAELSPEERAPPGRPGAPEAAELELEEDEEEGEEAELDGDLLEEEELEEAEEEDRSS
LLLLSPPAATASQTQQIPGGSLGSVLLPAARFDAREAAAAAAAAGVLYGGDDAQGMMAAMLSHAYGPGGC
GAAAAALNGEQAALLRRKSVNTTECVPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPIFVVT
GRKEDVAMAKREILSAAEHFSMIRASRNKNGPALGGLSCSPNLPGQTTVQVRVPYRVVGLVVGPKGATIK
RIQQQTHTYIVTPSRDKEPVFEVTGMPENVDRAREEIEMHIAMRTGNYIELNEENDFHYNGTDVSFEGGT
LGSAWLSSNPVPPSRARMISNYRNDSSSSLGSGSTDSYFGSNRLADFSPTSPFSTGNFWFGDTLPSVGSE
DLAVDSPAFDSLPTSAQTIWTPFEPVNPLSGFGSDPSGNMKTQRRGSQPSTPRLSPTFPESIEHPLARRV
RSDPPSTGNHVGLPIYIPAFSNGTNSYSSSNGGSTSSSPPESRRKHDCVICFENEVIAALVPCGHNLFCM
ECANKICEKRTPSCPVCQTAVTQAIQIHS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH