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Report for CCDS35200.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35200.1 Public Homo sapiens X VCX2 24 110 108 CCDS HistoryNCBI Gene:51480Re-query CCDS DB by CCDS ID:35200.1See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35200.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000317103.5 ENSP00000321309.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000317103.5Link to Ensembl Protein Viewer:ENSP00000321309.4Re-query CCDS DB by Nucleotide ID:ENST00000317103Re-query CCDS DB by Protein ID:ENSP00000321309
Original member Current member NCBI NM_016378.3 NP_057462.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016378.3Link to Protein Sequence:NP_057462.2Re-query CCDS DB by Nucleotide ID:NM_016378Re-query CCDS DB by Protein ID:NP_057462Link to BLAST:NP_057462.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057462.2 139 Q9H322 139 100% 0 0

Chromosomal Locations for CCDS 35200.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 8170032 8170349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 8170542 8170643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (420 nt):
ATGAGTCCAAAGCCGAGAGCCTCGGGACCTCCGGCCAAGGCCACGGAGGCAGGAAAGAGGAAGTCCTCCT
CTCAGCCGAGCCCCAGTGACCCGAAGAAGAAGACTACCAAGGTGGCCAAGAAGGGAAAAGCAGTTCGTAG
AGGGAGACGCGGGAAGAAAGGGGCTGCGACAAAGATGGCGGCCGTGACGGCACCTGAGGCGGAGAGCGCG
CCAGCGGCACCCGGCCCCAGCGACCAGCCCAGCCAGGAGCTCCCTCAGCACGAGCTGCCGCCGGAGGAGC
CAGTGAGCGAGGGGACCCAGCACGACCCCCTGAGTCAGGAGAGCGAGGTGGAAGAACCACTGAGTCAGGA
GAGCGAGGTGGAAGAACCACTGACTGTGTGGATGGCCAGCTTTTCCCCTGTCTCCGAGAGCACCGACTAA

Translation (139 aa):
MSPKPRASGPPAKATEAGKRKSSSQPSPSDPKKKTTKVAKKGKAVRRGRRGKKGAATKMAAVTAPEAESA
PAAPGPSDQPSQELPQHELPPEEPVSEGTQHDPLSQESEVEEPLSQESEVEEPLTVWMASFSPVSESTD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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