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Report for CCDS13117.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13117.1 Public Homo sapiens 20 ESF1 24 110 108 CCDS HistoryNCBI Gene:51575Re-query CCDS DB by CCDS ID:13117.1See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13117.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000202816.5 ENSP00000202816.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000202816.5Link to Ensembl Protein Viewer:ENSP00000202816.1Re-query CCDS DB by Nucleotide ID:ENST00000202816Re-query CCDS DB by Protein ID:ENSP00000202816
Original member Current member EBI ENST00000617257.2 ENSP00000480783.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000617257.2Link to Ensembl Protein Viewer:ENSP00000480783.2Re-query CCDS DB by Nucleotide ID:ENST00000617257Re-query CCDS DB by Protein ID:ENSP00000480783
Original member Current member NCBI NM_001276380.2 NP_001263309.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001276380.2Link to Protein Sequence:NP_001263309.1Re-query CCDS DB by Nucleotide ID:NM_001276380Re-query CCDS DB by Protein ID:NP_001263309Link to BLAST:NP_001263309.1
Original member Current member NCBI NM_016649.4 NP_057733.2 Accepted alive Link to Nucleotide Sequence:NM_016649.4Link to Protein Sequence:NP_057733.2Re-query CCDS DB by Nucleotide ID:NM_016649Re-query CCDS DB by Protein ID:NP_057733Link to BLAST:NP_057733.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001263309.1 851 Q9H501 851 100% 0 0
NP_057733.2 851 Q9H501 851 100% 0 0

Chromosomal Locations for CCDS 13117.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 13714874 13715167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 13717368 13717514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 13718908 13718984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 13728378 13728465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 13733721 13733842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 13759692 13759853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 13766777 13766924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 13769907 13770021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 13771331 13771483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 13772515 13772615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 13775157 13775270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 13775873 13776270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 13782504 13783140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2556 nt):
ATGTCATCCAAACAAGAAATAATGAGTGACCAGCGGTTTAGACGGGTTGCAAAGGACCCGAGATTTTGGG
AA
ATGCCAGAAAAGGATCGAAAAGTCAAAATTGACAAGAGATTTCGAGCCATGTTTCATGACAAGAAGTT
C
AAGTTGAACTATGCCGTGGATAAAAGAGGGCGCCCCATTAGCCATAGCACTACAGAGGATTTGAAGCGT
TTT
TACGACCTTTCAGATTCTGATTCCAATCTCTCTGGTGAAGATAGCAAAGCATTGAGTCAAAAGAAAA
TA
AAGAAGAAAAAAACCCAGACTAAAAAAGAAATCGATTCAAAAAATCTAGTTGAGAAAAAGAAAGAAAC
C
AAGAAGGCTAATCACAAGGGTTCTGAAAATAAAACTGATTTAGATAATTCTATAGGAATTAAAAAAATG
AAA
ACCTCATGTAAATTTAAGATAGATTCAAACATAAGTCCGAAGAAGGATAGCAAAGAATTTACACAAA
AA
AATAAGAAAGAGAAAAAAAACATTGTTCAACATACTACAGACTCTTCTCTCGAAGAAAAACAAAGGAC
A
TTAGACTCAGGCACCTCTGAAATTGTGAAATCTCCCAGAATCGAGTGTTCTAAGACAAGAAGAGAAATG
CAA
TCAGTGGTTCAACTCATAATGACAAGAGACAGTGATGGTTATGAAAACTCAACAGATGGTGAAATGT
GT
GACAAAGATGCTCTGGAGGAAGATTCAGAAAGCGTTAGTGAAATAGGAAGTGATGAGGAATCTGAAAA
T
GAAATTACAAGTGTTGGTAGAGCTTCAGGTGATGACGATGGAAGTGAAGATGATGAAGAGGAGGATGAA
GAT
GAAGAGGAGGATGAAGATGAGGATAGTGAGGATGATGATAAAAGTGACAGTGGCCCTGATCTTGCAA
GG
GGTAAAGGAAATATAGAAACTAGTTCTGAAGATGAAGATGATACGGCAGATTTGTTTCCAGAAGAATC
T
GGTTTTGAGCATGCTTGGAGAGAATTAGATAAAGATGCTCCTCGTGCTGATGAGATTACACGTCGATTA
GCA
GTTTGTAACATGGACTGGGATAGATTAAAGGCAAAAGATTTGCTGGCTCTGTTCAATTCATTTAAAC
CC
AAAGGAGGTGTAATATTTTCCGTCAAGATATATCCTTCAGAATTTGGAAAGGAGAGGATGAAGGAAGA
G
CAAGTTCAAGGACCAGTAGAGCTATTAAGTATTCCTGAAGATGCCCCAGAAAAAGACTGGACGTCTAGA
GAA
AAATTGAGAGATTATCAATTCAAACGACTGAAGTACTATTATGCAGTAGTAGACTGTGATTCTCCGG
AA
ACAGCTAGTAAAATTTATGAGGATTGTGATGGCCTGGAATTTGAAAGTAGTTGTTCTTTCATAGATCT
A
AGGTTTATACCAGATGATATTACTTTTGATGATGAGCCTAAGGATGTAGCCTCAGAAGTGAATTTAACA
GCA
TATAAACCAAAATATTTCACTTCTGCTGCAATGGGAACATCAACGGTGGAAATCACTTGGGATGAGA
CT
GATCATGAAAGAATTACAATGCTCAACAGGAAGTTTAAAAAGGAAGAGCTTTTGGACATGGATTTTCA
A
GCCTACTTAGCTTCCTCTAGTGAAGATGAAGAGGAGATAGAAGAGGAGCTACAAGGTGATGATGGAGTC
AAT
GTAGAAGAAGATGGGAAAACAAAGAAAAGTCAGAAGGATGATGAAGAACAAATTGCTAAATACAGGC
AG
CTCTTGCAGGTTATTCAAGAAAAAGAAAAGAAAGGCAAAGAAAATGATATGGAAATGGAAATTAAATG
G
GTTCCAGGTCTTAAAGAAAGTGCAGAAGAGATGGTCAAAAACAAATTGGAAGGAAAGGATAAACTGACC
CCT
TGGGAACAATTTTTAGAGAAGAAGAAAGAGAAAAAAAGACTGAAAAGGAAACAGAAGGCTCTTGCTG
AA
GAGGCCAGTGAAGAGGAACTTCCCTCTGATGTTGATTTGAATGACCCATACTTTGCTGAAGAAGTTAA
A
CAAATAGGTATAAATAAAAAATCGGTAAAATCTGCAAAAGATGGCACATCTCCAGAAGAAGAAATTGAA
ATA
GAAAGACAAAAGGCTGAAATGGCTTTGCTTATGATGGATGAGGACGAGGACAGTAAGAAACACTTCA
AT
TACAACAAGATTGTGGAGCACCAGAATCTGAGCAAAAAGAAGAAAAAGCAGCTCATGAAAAAGAAGGA
A
TTAATAGAGGATGACTTTGAGGTAAATGTTAACGATGCACGGTTTCAGGCAATGTACACTTCCCACTTG
TTC
AATTTGGACCCCTCAGATCCCAATTTCAAGAAAACAAAAGCTATGGAAAAAATCCTTGAGGAGAAGG
CC
CGGCAAAGAGAACGGAAAGAACAAGAACTTACTCAGGCAATAAAGAAAAAAGAGAGTGAGATTGAAAA
G
GAATCACAAAGGAAGTCCATTGATCCTGCTTTGTCAATGTTGATTAAATCTATAAAAACCAAAACAGAG
CAG
TTTCAAGCAAGAAAAAAGCAAAAAGTCAAATAA


Translation (851 aa):
MSSKQEIMSDQRFRRVAKDPRFWEMPEKDRKVKIDKRFRAMFHDKKFKLNYAVDKRGRPISHSTTEDLKR
F
YDLSDSDSNLSGEDSKALSQKKIKKKKTQTKKEIDSKNLVEKKKETKKANHKGSENKTDLDNSIGIKKM
K
TSCKFKIDSNISPKKDSKEFTQKNKKEKKNIVQHTTDSSLEEKQRTLDSGTSEIVKSPRIECSKTRREM
Q
S
VVQLIMTRDSDGYENSTDGEMCDKDALEEDSESVSEIGSDEESENEITSVGRASGDDDGSEDDEEEDE
D
EEEDEDEDSEDDDKSDSGPDLARGKGNIETSSEDEDDTADLFPEESGFEHAWRELDKDAPRADE
ITRRL
A
VCNMDWDRLKAKDLLALFNSFKPKGGVIFSVK
IYPSEFGKERMKEEQVQGPVELLSIPEDAPEKDWTSR
E
KLRDYQFKRLKYYYAVVDCDSPETASKIYEDCDGLEFESSCSFIDL
RFIPDDITFDDEPKDVASEVNLT
A
YKPKYFTSAAMGTST
VEITWDETDHERITMLNRKFKKEELLDMDFQAYLASSSEDEEEIEEELQGDDGV
N
VEEDGKTKKSQKDDEEQIAKYRQLLQVIQEKEKKGKENDMEMEIKWVP
GLKESAEEMVKNKLEGKDKLT
P
WEQFLEKKKEKKRLKRKQK
ALAEEASEEELPSDVDLNDPYFAEEVKQIGINKKSVKSAKDGTSPEEEIE
I
ERQK
AEMALLMMDEDEDSKKHFNYNKIVEHQNLSKKKKKQLMKKKELIEDDFEVNVNDARFQAMYTSHL
F
NLDPSDPNFKKTKAMEKILEEKARQRERKEQELTQAIKKKESEIEKESQRKSIDPALSMLIKSIKTKTE
Q
FQARKKQKVK




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser