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Report for CCDS9705.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9705.1 Public Homo sapiens 14 RTRAF 24 110 108 CCDS HistoryNCBI Gene:51637Re-query CCDS DB by CCDS ID:9705.1See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9705.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000261700.8 ENSP00000261700.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000261700.8Link to Ensembl Protein Viewer:ENSP00000261700.3Re-query CCDS DB by Nucleotide ID:ENST00000261700Re-query CCDS DB by Protein ID:ENSP00000261700
Original member Current member NCBI NM_016039.3 NP_057123.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016039.3Link to Protein Sequence:NP_057123.1Re-query CCDS DB by Nucleotide ID:NM_016039Re-query CCDS DB by Protein ID:NP_057123Link to BLAST:NP_057123.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057123.1 244 Q9Y224 244 100% 0 0

Chromosomal Locations for CCDS 9705.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 51989640 51989700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 51991317 51991441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 51993723 51993822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 51998494 51998580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 51999708 51999796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 52001798 52001866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 52004194 52004242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 52004362 52004516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (735 nt):
ATGTTCCGACGCAAGTTGACGGCTCTCGACTACCACAACCCCGCCGGCTTCAACTGCAAAGATGAAACAG
AATTTAGAAACTTCATCGTTTGGCTTGAAGACCAGAAAATCAGGCACTACAAGATTGAAGACAGAGGGAA
TTTAAGAAACATCCACAGCAGCGACTGGCCCAAGTTCTTTGAAAAGTATCTCAGAGATGTTAACTGTCCT
TTCAAGATTCAAGATCGACAAGAAGCTATTGACTGGCTTCTTGGTTTAGCTGTTAGACTTGAATATGGAG
ATAATGCTGAAAAATACAAGGATTTAGTACCTGATAATTCAAAAACTGCTGACAATGCAACTAAAAATGC
AGAACCATTGATCAATTTGGATGTAAATAATCCTGATTTTAAGGCTGGTGTGATGGCTTTGGCTAACCTG
CTTCAGATTCAGCGTCATGATGATTACCTGGTAATGCTTAAGGCAATTCGGATTTTGGTTCAGGAGCGCC
TGACACAGGATGCAGTTGCTAAGGCAAATCAAACAAAAGAGGGCTTACCTGTTGCTTTAGACAAACATAT
TCTTGGTTTTGACACAGGAGATGCAGTTCTTAATGAAGCTGCTCAAATTCTGCGATTGCTGCACATAGAG
GAGCTCAGAGAGCTACAGACAAAAATCAACGAAGCCATAGTAGCTGTTCAGGCAATTATTGCTGATCCAA
AGACAGACCACAGACTGGGAAAAGTTGGAAGATGA

Translation (244 aa):
MFRRKLTALDYHNPAGFNCKDETEFRNFIVWLEDQKIRHYKIEDRGNLRNIHSSDWPKFFEKYLRDVNCP
FKIQDRQEAIDWLLGLAVRLEYGDNAEKYKDLVPDNSKTADNATKNAEPLINLDVNNPDFKAGVMALANL
LQIQRHDDYLVMLKAIRILVQERLTQDAVAKANQTKEGLPVALDKHILGFDTGDAVLNEAAQILRLLHIE
ELRELQTKINEAIVAVQAIIADPKTDHRLGKVGR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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