NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS8952.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8952.1 Public Homo sapiens 12 TSPAN31 24 110 108 CCDS HistoryNCBI Gene:6302Re-query CCDS DB by CCDS ID:8952.1Re-query CCDS DB by GeneID:6302See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8952.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000257910.8 ENSP00000257910.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000257910.8Link to Ensembl Protein Viewer:ENSP00000257910.3Re-query CCDS DB by Nucleotide ID:ENST00000257910Re-query CCDS DB by Protein ID:ENSP00000257910
Original member Current member NCBI NM_005981.5 NP_005972.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005981.5Link to Protein Sequence:NP_005972.1Re-query CCDS DB by Nucleotide ID:NM_005981Re-query CCDS DB by Protein ID:NP_005972Link to BLAST:NP_005972.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005972.1 210 Q12999 210 100% 0 0

Chromosomal Locations for CCDS 8952.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 57745155 57745217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 57745745 57745912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 57746176 57746256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 57746589 57746720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 57747018 57747131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 57747216 57747290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (633 nt):
ATGGTTTGTGGCGGCTTTGCCTGCTCCAAGAATGCGCTTTGCGCTCTCAACGTGGTCTACATGCTGGTGA
GCTTGTTGCTCATTGGAGTGGCTGCTTGGGGCAAGGGCCTGGGTCTGGTGTCCAGCATCCACATCATCGG
CGGAGTCATTGCTGTGGGAGTCTTCCTTCTCCTTATTGCAGTGGCTGGACTGGTGGGTGCTGTCAACCAC
CACCAAGTCCTGCTGTTCTTTTACATGATCATCCTTGGTTTGGTCTTCATCTTCCAATTTGTAATCTCTT
GCTCATGTCTGGCTATTAACCGAAGCAAACAGACAGATGTCATCAATGCTTCTTGGTGGGTCATGAGCAA
CAAGACTCGGGATGAACTGGAAAGAAGTTTTGATTGTTGTGGCTTATTCAACCTCACAACCCTGTATCAA
CAAGATTATGATTTCTGCACTGCAATCTGCAAGAGCCAGAGCCCCACATGCCAGATGTGTGGAGAAAAGT
TTCTTAAGCATTCAGACGAAGCCCTGAAAATCCTAGGGGGTGTTGGACTCTTCTTTAGCTTTACAGAGAT
CCTTGGTGTTTGGCTAGCAATGAGATTTCGGAATCAGAAGGATCCTAGAGCCAACCCCAGTGCCTTTCTA
TGA

Translation (210 aa):
MVCGGFACSKNALCALNVVYMLVSLLLIGVAAWGKGLGLVSSIHIIGGVIAVGVFLLLIAVAGLVGAVNH
HQVLLFFYMIILGLVFIFQFVISCSCLAINRSKQTDVINASWWVMSNKTRDELERSFDCCGLFNLTTLYQ
QDYDFCTAICKSQSPTCQMCGEKFLKHSDEALKILGGVGLFFSFTEILGVWLAMRFRNQKDPRANPSAFL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH