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Report for CCDS3776.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3776.1 Public Homo sapiens 4 GATB 24 110 108 CCDS HistoryNCBI Gene:5188Re-query CCDS DB by CCDS ID:3776.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3776.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000263985.11 ENSP00000263985.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000263985.11Link to Ensembl Protein Viewer:ENSP00000263985.6Re-query CCDS DB by Nucleotide ID:ENST00000263985Re-query CCDS DB by Protein ID:ENSP00000263985
Original member Current member NCBI NM_004564.3 NP_004555.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004564.3Link to Protein Sequence:NP_004555.1Re-query CCDS DB by Nucleotide ID:NM_004564Re-query CCDS DB by Protein ID:NP_004555Link to BLAST:NP_004555.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004555.1 557 O75879 557 100% 0 0

Chromosomal Locations for CCDS 3776.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 151671174 151671302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 151672762 151672896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 151679813 151679891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 151688630 151688763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 151701329 151701518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 151703851 151703895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 151705185 151705269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 151707988 151708101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 151716009 151716131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 151716876 151717074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 151719425 151719538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 151758772 151758922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 151760807 151760982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1674 nt):
ATGGCGGCGCCCATGCTGCGCTGGGGCTGCCGTGGAAGACGTTGGGCTTTCGCCCGGGTTGACGGTGGTT
CTTGCCACCGAAGAGGGGCTCCGACTGGGTCCACATCCAACCAGATTAGGGGAGAGAGCTCAGTGGCTCA
GCAGCCCCTCCACACGGCCCAGAAGACGAGGAAAGGTGAACACAAATGGGCTGCTGTGGTAGGTTTGGAA
ATTCATGCCCAGATTTCCTCCAACTCTAAACTCTTCTCTGGATCTCAAGTTCGCTTTTCAGCACCTCCAA
ATTCTTTGGTTTCTTTTTTTGATGCATCTCTACCTGGAACTTTGCCGGTTCTCAACAGGAGGTGTGTAGA
AGCGGCGGTGATGACAGGCCTGGCTCTGAACTGCCACATAAACAAGAAGTCCTTGTTTGACAGGAAGCAC
TACTTCTATGCAGACCTCCCTGCAGGCTACCAAATTACCCAGCAGAGGCTCCCAATTGCTGTGAATGGGA
GCTTGATATATGGCGTCTGTGCAGGGAAGAAGCAGAGTCAGGTGATCCCCAAGACGGTGAGGATCAAGCA
GATCCAGTTGGAGCAAGACAGTGGCAAAAGCCTCCACGACAACCTGAGGTCTCAGACGCTCATTGATTTG
AACAGGGCAGGAGTGGGCCTTCTGGAGGTGGTCCTGGAGCCCGACATGTCCTGTGGAGAAGAGGCGGCAA
CAGCTGTCAGGGAGCTGCAGCTGATCCTTCAAGCCCTGGGGACCAGCCAGGCGAACATGGCAGAGGGCCA
GTTGAGAGTGGATGCCAATATATCCGTGCATCACCCTGGGGAGCCTTTGGGCGTTCGAACGGAAGTGAAG
AATCTCAACAGCATCAGGTTCCTGGCCAAAGCCATAGACTATGAAATTCAGAGGCAAATCAATGAACTTG
AGAATGGAGGTGAAATTCTGAACGAAACACGCTCATTTCATCACAAGCTGGGGTGCACCATGTCAATGAG
AGACAAAGAAGGAAAACAGGACTACAGGTTCATGCCAGAACCCAACCTGCCTCCCCTGGTGCTCTACGAC
GCCACATCTCTGCCCGCAGGTGCAGACCCACAGCAAGTGATCAATATTGACCAGATTCGGGAGACACTCC
CGGAGCTCCCCAGTGTGACCCGAGAGAAGCTTGTCCAACAGTATGGGATGCTGCTGGAACACAGCTTCAC
TTTGCTGAACGAAGTCGGCCTACTGGAGTTCTTCCAAAATGTGATAAAAGAAACTAGGGCAGAGCCAAAA
AAGGTGACTAGTTGGGTCCTCAACACTTTTCTGGGCTATTTAAAGCAACAGAACCTCGCTGTCAGTGAGA
GTCCTGTCACACCCTCTGCACTCGCTGAGCTTCTTGACCTGCTGGACAGCAGAACAATTTCTTCATCAGC
AGCTAAACAGGTGTTTGAGGAACTGTGGAAGAGGGAAGGCAAGACTCCAGGGCAGATTGTTTCAGAAAAG
CAGCTTGAACTGATGCAGGACCAGGGGGCACTGGAGCAGCTCTGCCACTCTGTGATGGAGGCCCATCCTC
AAGTGGTAATGGATGTGAAGAACAGAAACCCCAGAGCTATAAATAAACTGATTGGGTTGGTCCGGAAAGC
GACTCAAAGCCGAGCAGATCCAGTCATGATAAAGGAGATCCTGGAGAAGAAGCTGTCATTGTGA

Translation (557 aa):
MAAPMLRWGCRGRRWAFARVDGGSCHRRGAPTGSTSNQIRGESSVAQQPLHTAQKTRKGEHKWAAVVGLE
IHAQISSNSKLFSGSQVRFSAPPNSLVSFFDASLPGTLPVLNRRCVEAAVMTGLALNCHINKKSLFDRKH
YFYADLPAGYQITQQRLPIAVNGSLIYGVCAGKKQSQVIPKTVRIKQIQLEQDSGKSLHDNLRSQTLIDL
NRAGVGLLEVVLEPDMSCGEEAATAVRELQLILQALGTSQANMAEGQLRVDANISVHHPGEPLGVRTEVK
NLNSIRFLAKAIDYEIQRQINELENGGEILNETRSFHHKLGCTMSMRDKEGKQDYRFMPEPNLPPLVLYD
ATSLPAGADPQQVINIDQIRETLPELPSVTREKLVQQYGMLLEHSFTLLNEVGLLEFFQNVIKETRAEPK
KVTSWVLNTFLGYLKQQNLAVSESPVTPSALAELLDLLDSRTISSSAAKQVFEELWKREGKTPGQIVSEK
QLELMQDQGALEQLCHSVMEAHPQVVMDVKNRNPRAINKLIGLVRKATQSRADPVMIKEILEKKLSL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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