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Report for CCDS23841.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23841.1 Public Mus musculus 10 Nus1 23 108 98 CCDS HistoryNCBI Gene:52014Re-query CCDS DB by CCDS ID:23841.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23841.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023830.15 ENSMUSP00000023830.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023830.15Link to Ensembl Protein Viewer:ENSMUSP00000023830.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000023830Re-query CCDS DB by Protein ID:ENSMUSP00000023830
Original member Current member NCBI NM_030250.2 NP_084526.1 Accepted alive Link to Nucleotide Sequence:NM_030250.2Link to Protein Sequence:NP_084526.1Re-query CCDS DB by Nucleotide ID:NM_030250Re-query CCDS DB by Protein ID:NP_084526Link to BLAST:NP_084526.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_084526.1 297 Q99LJ8 297 100% 0 0

Chromosomal Locations for CCDS 23841.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 52417742 52418168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 52429193 52429318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 52430067 52430216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 52433345 52433444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 52436577 52436667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (894 nt):
ATGACGGGGCTGTACGAGCTGGTGTGGCGGGTGCTGCACGCGCTGCTCTGCCTGCACCTCACGCTCACCT
CCTGGCTCCGCGTTCGCTTCGGCACCTGGAACTGGATCTGGCGGCGCTGCTGTCGCGCCGCCTCCGCCGC
GGTCCTAGCGCCGCTCGGCTTCACGCTCCGCAAGCCCCGGGCCGTCGGCAGGAACCGGCGTCATCACCGG
CACCCGCACGGGGGACCGGGACCGGGACCGGGACCGGCCGCCACCCATCCTCGGCTGCGCTGGCGCGCGG
ACGTCCGGTCCCTGCAGAAGCTGCCGGTGCACATGGGCCTGTTGGTCACGGAGGAAGTGCAGGAGCCCAG
CTTCTCAGACATCGCCAGCCTCGTGGTGTGGTGTATGGCCGTGGGGATCTCCTACATTAGCGTCTACGAC
CACCAAGGTATTTTCAAGAGAAATAATTCCAGATTGATGGATGAAATTTTAAAACAGCAACAGGAACTTT
TGGGCCAAGATTGTTCCAAATACTCAGCAGAGTTTGCAAATAGTAATGACAAAGACGATCAAGATTTAAA
TTGCCCTTCGGCAGTGAAGGTGCTGTCCCCAGAAGATGGAAAAGCGGATATTGTGAGAGCTGCCCAGGAT
TTTTGCCAGTTAGTAGCCCAGCAGCAGAGGAAGCCCACAGATCTGGATGTAGATCTGCTAGGCAGCTTAC
TTAGTTCACATGGGTTCCCTGATCCTGACTTAGTGTTGAAGTTTGGTCCTGTGGACAGCACATTAGGCTT
TCTTCCCTGGCAAATCAGATTGACTGAGATCGTCTCTCTGCCTTCTCACCTAAACATCAGCTATGAGGAC
TTCTTCTCCGCCCTTCGGCAGTATGCAGCTTGCGAACAGCGACTGGGAAAGTAA

Translation (297 aa):
MTGLYELVWRVLHALLCLHLTLTSWLRVRFGTWNWIWRRCCRAASAAVLAPLGFTLRKPRAVGRNRRHHR
HPHGGPGPGPGPAATHPRLRWRADVRSLQKLPVHMGLLVTEEVQEPSFSDIASLVVWCMAVGISYISVYD
HQGIFKRNNSRLMDEILKQQQELLGQDCSKYSAEFANSNDKDDQDLNCPSAVKVLSPEDGKADIVRAAQD
FCQLVAQQQRKPTDLDVDLLGSLLSSHGFPDPDLVLKFGPVDSTLGFLPWQIRLTEIVSLPSHLNISYED
FFSALRQYAACEQRLGK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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