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Report for CCDS29067.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29067.1 Public Mus musculus 18 Osbpl1a 23 108 98 CCDS HistoryNCBI Gene:64291Re-query CCDS DB by CCDS ID:29067.1Re-query CCDS DB by GeneID:64291See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29067.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000074352.10 ENSMUSP00000073957.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000074352.10Link to Ensembl Protein Viewer:ENSMUSP00000073957.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000074352Re-query CCDS DB by Protein ID:ENSMUSP00000073957
Original member Current member NCBI NM_207530.3 NP_997413.2 Accepted alive Link to Nucleotide Sequence:NM_207530.3Link to Protein Sequence:NP_997413.2Re-query CCDS DB by Nucleotide ID:NM_207530Re-query CCDS DB by Protein ID:NP_997413Link to BLAST:NP_997413.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_997413.2 950 Q91XL9-1 950 100% 0 0

Chromosomal Locations for CCDS 29067.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 12756205 12756307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12757608 12757698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12758767 12758890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12759399 12759515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12762566 12762692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12762909 12762998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12763482 12763589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12766803 12766985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12768538 12768635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12771299 12771433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12788320 12788395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12819505 12819661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12841184 12841346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12871078 12871184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12882196 12882277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12892167 12892289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12898203 12898301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12905023 12905086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12905194 12905267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12905971 12906015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12906888 12906949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12909858 12910002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12911077 12911162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12914502 12914613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12928261 12928335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12929008 12929093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12933580 12933700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2853 nt):
ATGAACACAGAAGCAGAACAGCAGCTTCTCCATCATGCCAGAAATGGCAATGCTGAAGAGGTGCGAAAGC
TGCTGGCAGCCATGGCACGGATGGAAGTGGTCGCTGACATCGACTGTAAAGGAAGAAGTAAGTCTAACTT
GGGCTGGACACCTCTTCACCTGGCATGCTATTTTGGACACAAACAAGTGGTCGAGGATCTGTTGAAGGCT
GGTGCAAAAGTGAACATGTTAAACGACATGGGGGACACGCCACTGCATCGAGCCGCCTTCACAGGACGAA
AGGAGCTGGTCTTGCTTCTTTTAGAATACGATGCTGACAGTACAGTTGTAAATGGAAGTGGACAGACAGC
AAAAGAAGCCACCCATGACAAAGAAATCAGAAACATGCTTGAAGCTGTGGAGAGGACTCAACAAAGAAAG
CTTGAAGAATTGCTTTTAGGAGCAGCTAGAGAAGGAAGAACAGCCGAAGTATCAGCTCTGCTCAGCAGGC
CCAATCCTCCTGATGTGAACTGCTCAGATCAGCTAGGAAATACCCCCTTACACTGTGCCGCCTACCGGGC
CCACAAGCAGTGTGTCCTAAAGCTCCTGAGAAGCGGAGCTGACCCCAGCCTGAAGAACAAGAACGATCAG
AAACCTCTTGACCTTGCCCAGGGTGCTGAAATGAAGCATATTCTTGTTGGTAATAAGGTTGTCCACAAAG
CACTGAAACGCTACGAAGGCCCTCTCTGGAAGAGTTCAAGATTTTTTGGCTGGAAGTTATTTTGGGTAGT
GTTAGAACATGGAGTCCTTTCCTGGTATAGGAAGCAGCCTGATGCAGTCCATAATTCTTATCGCCAAGGA
TGCAAACACCTGACTCAAGCCGTGTGCACGGTGAAACCTACAGATAGCTGCCTCTTCTCCATTCGATGCT
TTGATGACACTGTTCACTGCTTCAGGGTTCCTAAGAACAGCGTACAGCAATCAAGAGAGAAGTGGCTGGA
AGCAATTGAAGAACACTCCGCATACAGCACTCACTACTGTTCCCAGGATCAGGTGACTGATGATGAAGAA
GAAGATGTAGTTTCGGCCATGGACTTGAAGGAGTCGTTAGCGAGAGCACAAACATGTCAACAGAGACTAG
ATAGGGAAATTTACAACTTTCTCAAAATGATTAAGGAGTGTGATGTGGCCAAAGATATGCTTCCATCGTT
TCTTCAGAAAGCTGATATTGTCTCCGAAGCTTCTAGAGAGACTTGTGTGGCGTTGAATGACTGTCTTAAT
CTCTTCACTAAACAGGAAGGGGTGAGGAATTTTAAATTGGAACAGGAGCAAGAAAAAAACAAAATTTTGT
CAGAAGCACTGGAGACTTTAGCCACTGAGCATCATGAACTAGAACGATCCCTGGTTGAAGGATCCCCGCC
TGTCAGCATCCTTAGTGAGGAGGAGTTCTATGATGCACTGTCAGGTTCCGAGTCCGAGGGGTCGCTGACT
TGCCTGGAAGCTGTGACAGCACACTCCTTTGAAGAGAACGAAGTGCCTGGGAGCAGCGGAAAGCACAGAA
TGTCTGAAGGAAAAGACTGTGGTGGGGGAGATGCGCTCTCCAATGGCATCAAAAAGCACAGAACAAGCCT
GCCATCACCTATGTTCTCCAGAAACGATTTCAGCATCTGGAGCATCCTCAGAAAATGCATTGGGATGGAA
CTGTCCAAGATCACAATGCCAGTGATATTTAATGAGCCTCTGAGCTTCCTGCAGCGGCTAACTGAATACA
TGGAGCACACGTACCTCATCCACAAAGCCAGTTCACTTTCTGATCCTGTGGAAAGGATGCAGTGTGTGGC
TGCATTTGCTGTGTCTGCTGTCGCCTCTCAGTGGGAGCGCACCGGAAAGCCCTTCAACCCGCTTCTGGGA
GAGACTTATGAATTAGTTCGAGATGACCTTGGGTTTAGGCTCATCTCAGAACAGGTCAGCCATCATCCCC
CAATCAGTGCATTCCATGCAGAAGGGCTCAACAATGACTTCATCTTCCATGGCTCAATTTACCCCAAACT
GAAGTTCTGGGGCAAGAGTGTAGAAGCAGAGCCTAAAGGAACCATCACCTTGGAGCTTTTAGACCACAAC
GAAGCATACACATGGACAAACCCCACCTGTTGTGTGCATAACATCATCGTGGGCAAGCTCTGGATTGAAC
AGTATGGCAACGTGGAAATCATAAACCACAAGACTGGGGACAAATGTGTGCTGAATTTTAAGCCATGTGG
TCTTTTTGGCAAGGAATTACACAAAGTTGAAGGCTACATACAAGATAAAAGCAAAAAGAAGCTCTGTGCT
CTCTATGGGAAGTGGACTGAGTGCTTGTACAGCGTAGACCCTGCCACTTTTGATGCTTACAAAAAAAATG
ATAAGAAAAACACAGAAGAGAAGAAGAACAGCAAACAGACAAGCTCATCTGAGGAGTCTGATGAAATGCC
AGTGCCAGATTCCGAGAGCGTATTCATTATCCCTGGAAGTGTGCTCCTGTGGCGGATAGCCCCGCGGCCT
CCCAACTCTGCTCAGATGTATAACTTTACCAGCTTTGCCATGGTTTTGAATGAAGTCGACAAGGAGATGG
AGAGTGTGATTCCCAAGACTGACTGCAGGCTACGGCCTGACATCAGAGCCATGGAGAACGGAGAGATAGA
TCTAGCTAGTGAAGAAAAGAAACGGCTTGAGGAAAAGCAAAGAGCAGCCCGCAAGAACAGGTCCAAGTCG
GAAGAGGACTGGAAGACAAGGTGGTTCCATCAAGGTCCTAACCCCTACAGTGGAGCACAGGACTGGATTT
ATTCTGGCAGCTACTGGGACAGAAACTACTTCAATTTGCCTGATATTTATTAA

Translation (950 aa):
MNTEAEQQLLHHARNGNAEEVRKLLAAMARMEVVADIDCKGRSKSNLGWTPLHLACYFGHKQVVEDLLKA
GAKVNMLNDMGDTPLHRAAFTGRKELVLLLLEYDADSTVVNGSGQTAKEATHDKEIRNMLEAVERTQQRK
LEELLLGAAREGRTAEVSALLSRPNPPDVNCSDQLGNTPLHCAAYRAHKQCVLKLLRSGADPSLKNKNDQ
KPLDLAQGAEMKHILVGNKVVHKALKRYEGPLWKSSRFFGWKLFWVVLEHGVLSWYRKQPDAVHNSYRQG
CKHLTQAVCTVKPTDSCLFSIRCFDDTVHCFRVPKNSVQQSREKWLEAIEEHSAYSTHYCSQDQVTDDEE
EDVVSAMDLKESLARAQTCQQRLDREIYNFLKMIKECDVAKDMLPSFLQKADIVSEASRETCVALNDCLN
LFTKQEGVRNFKLEQEQEKNKILSEALETLATEHHELERSLVEGSPPVSILSEEEFYDALSGSESEGSLT
CLEAVTAHSFEENEVPGSSGKHRMSEGKDCGGGDALSNGIKKHRTSLPSPMFSRNDFSIWSILRKCIGME
LSKITMPVIFNEPLSFLQRLTEYMEHTYLIHKASSLSDPVERMQCVAAFAVSAVASQWERTGKPFNPLLG
ETYELVRDDLGFRLISEQVSHHPPISAFHAEGLNNDFIFHGSIYPKLKFWGKSVEAEPKGTITLELLDHN
EAYTWTNPTCCVHNIIVGKLWIEQYGNVEIINHKTGDKCVLNFKPCGLFGKELHKVEGYIQDKSKKKLCA
LYGKWTECLYSVDPATFDAYKKNDKKNTEEKKNSKQTSSSEESDEMPVPDSESVFIIPGSVLLWRIAPRP
PNSAQMYNFTSFAMVLNEVDKEMESVIPKTDCRLRPDIRAMENGEIDLASEEKKRLEEKQRAARKNRSKS
EEDWKTRWFHQGPNPYSGAQDWIYSGSYWDRNYFNLPDIY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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