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Report for CCDS75331.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
75331.1 Public Homo sapiens 5 PCDHGA4 24 110 108 CCDS HistoryNCBI Gene:56111Re-query CCDS DB by CCDS ID:75331.1Re-query CCDS DB by GeneID:56111See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 75331.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000612927.1 ENSP00000477894.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000612927.1Link to Ensembl Protein Viewer:ENSP00000477894.1Re-query CCDS DB by Nucleotide ID:ENST00000612927Re-query CCDS DB by Protein ID:ENSP00000477894
Original member Current member NCBI NM_032053.3 NP_114442.2 Accepted alive Link to Nucleotide Sequence:NM_032053.3Link to Protein Sequence:NP_114442.2Re-query CCDS DB by Nucleotide ID:NM_032053Re-query CCDS DB by Protein ID:NP_114442Link to BLAST:NP_114442.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_114442.2 851 Q9Y5G9-2 851 100% 0 0

Chromosomal Locations for CCDS 75331.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 141355108 141357663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2556 nt):
ATGCACTTTATTTTGGACCCAGAAGATCCTGGGGCTCCTCAGGCCTCGACAGAGGGAAAACCGAAGCACA
GGCGACTCCGCGGCGGGGTTGTAATGGCGGCGCCTCCTGCTCGCCCAGACCACACCCGGCTGCTCCAGAT
CTGCCTTCTCCTGGGGGTTCTGGTGGAAATCAGGGCCGAACAGATTCTCTACTCGGTGTTTGAGGAGCAG
GAAGAAGGCTCAGTGGTGGGCAACATCGCCAAGGACCTGGGGTTGGCGCCCCGGGAGCTGGCGGAGCGCG
GAGTCCGCATCGTCTCCAGAGGTAGGACGCAGCTTTTCGCCCTGAACCCGCGCAGCGGCACCTTGGTCAC
CGCGGGTAGGATAGACAGGGAGGAGCTCTGCGACAGATCTCCAAACTGTGTGACAAACCTGGAGATTCTT
CTAGAAGATACAGTGAAGATTTTGCGGGTAGAGGTGGAAATAATCGATGTTAATGATAACCCACCCAGTT
TTGGGACAGAACAGAGGGAAATAAAAGTTGCTGAAAATGAAAATCCTGGGGCAAGATTTCCTCTTCCTGA
AGCTTTTGATCCGGATGTAGGTGTAAACTCCCTGCAGGGTTACCAGCTCAACTCAAACGGTTACTTTTCC
CTGGACGTGCAAAGTGGGGCCGATGGGATTAAGTACCCAGAGCTGGTGCTGGAACGCGCTCTAGATCGCG
AGGAAGAGGCGGTTCACCACCTCGTTCTCACGGCCTTCGATGGAGGTGACCCGGTTCGCTCTGGCACTGC
CAGGATTCTCATAATACTTGTGGATACCAACGATAATGCTCCCGTGTTCACTCAGCCCGAGTACCACGTA
AGTGTTCGTGAGAACGTTCCTGTAGGCACTCGGCTACTCACCGTAAAAGCCACTGATCCAGATGAAGGAG
CCAATGGAGACGTGACGTATTCTTTCCGGAAAGTAAGAGACAAAATATCACAGCTATTTCAGTTGAATTC
TCTGAGTGGGGATATAACAATATTGGGGGGTCTAGATTATGAGGACTCTGGATTCTATGACATAGATGTA
GAAGCCCATGATGGGCCTGGTCTCCGAGCTAGAAGCAAGGTACTGGTGACAGTTCTGGATGAAAATGACA
ACGCACCAGAAGTCACAGTTACATCTCTCACCAGCTCAGTCCAGGAATCTTCTTCCCCGGGTACAGTAAT
TGCACTTTTCAACGTGCATGACAGTGACTCAGGAGGAAATGGCCTAGTCACATGTTCTATTCCAGATAAT
CTGCCATTCACACTTGAAAAGACCTATGGAAATTATTATCGGTTGTTGACACACAGAACACTGGACAGGG
AAGAAGTCTCAGAATATAACATCACTGTAACTGCCACTGACCAGGGAACTCCTCCACTGTCTACAGAAAC
TCATATTTCACTGCAAGTGATGGACATCAATGACAACCCACCCACTTTCCCTCATGCTTCCTACTCTGCT
TACATTCCTGAAAACAACCCCAGAGGAGCCTCCATCTTATCTATGACTGCTCAAGACCCTGACAGTGGTG
ACAATGCCCGAATCACTTACTCCCTGGCCGAAGACACCTTCCAGGGTGCACCTCTGTCCTCCTATGTCTC
CATCAACTCCAATACAGGGATCCTATATGCTCTTTGCTCCTTCGACTATGAGCAGTTTAGAGACCTGCAG
CTGCTGATGACAGCCAGTGACAGTGGAGACCCTCCACTCAGCAGCAATGTGTCACTGAGCCTCTTTGTGC
TGGACCAGAACGACAATGTCCCTGAGATCCTGTACCCCACCTTCCCTACTGATGGCTCCACTGGTGTGGA
GCTGGCACCCCGCTCCGCAGATTCCGGCTACCTGGTGACCAAAGTGGTGGCAGTGGACAGAGACTCAGGT
CAGAATGCCTGGCTGTCCTACAGCCTACTCAAGTCCAGCGAGCCGGGACTATTTGCAGTGGGGCTGCACA
CAGGCGAGGTGCGCACCGCACGGGCCCTGCTGGACAGAGACGCGCTCAAGCAGAGGCTTGTAGTGGTCGT
CCAGGACCATGGCCAGCCCCCTCTCTCGGCCACCGTCACACTCACTGTGGCTGTGGCCGACAGCATCCCA
GATGTCCTGGCTGACTTGGGCAGCCTCAAGCCTTCAGCAGACCCAGACGACTCGGGCCTCACACTCTATC
TCGTGGTGGCAGTGGCCGCTGTCTCCTGCGTCTTCCTGGCTTTTGTCACGGTGCTGCTAGCACTCAAGCT
GAGACGCTGGCACAAGTCACGCCTGCTTCACGCTGAAGGCAGCAGGTTGGCAGGTGTGCCTGCCTCGCAC
TTTGTGGGCGTGGACGGGGTTCGGGCTTTCCTGCAGACCTATTCCCACGAGGTCTCCCTCACCGCGGACT
CGCGGAAGAGTCACCTGATCTTCTCCCAACCCAGCTATGCAGACACGCTCATCAGCCGGGAGAGTTGTGA
GAAAAGCGAGCCTCTTCTGATAACTCAGGATTTACTTGAAACAAAAGGAGACCCTAATCTTCAGGTGAGT
CAATCTTATAATAGATCATACCACACTGAAATATAG

Translation (851 aa):
MHFILDPEDPGAPQASTEGKPKHRRLRGGVVMAAPPARPDHTRLLQICLLLGVLVEIRAEQILYSVFEEQ
EEGSVVGNIAKDLGLAPRELAERGVRIVSRGRTQLFALNPRSGTLVTAGRIDREELCDRSPNCVTNLEIL
LEDTVKILRVEVEIIDVNDNPPSFGTEQREIKVAENENPGARFPLPEAFDPDVGVNSLQGYQLNSNGYFS
LDVQSGADGIKYPELVLERALDREEEAVHHLVLTAFDGGDPVRSGTARILIILVDTNDNAPVFTQPEYHV
SVRENVPVGTRLLTVKATDPDEGANGDVTYSFRKVRDKISQLFQLNSLSGDITILGGLDYEDSGFYDIDV
EAHDGPGLRARSKVLVTVLDENDNAPEVTVTSLTSSVQESSSPGTVIALFNVHDSDSGGNGLVTCSIPDN
LPFTLEKTYGNYYRLLTHRTLDREEVSEYNITVTATDQGTPPLSTETHISLQVMDINDNPPTFPHASYSA
YIPENNPRGASILSMTAQDPDSGDNARITYSLAEDTFQGAPLSSYVSINSNTGILYALCSFDYEQFRDLQ
LLMTASDSGDPPLSSNVSLSLFVLDQNDNVPEILYPTFPTDGSTGVELAPRSADSGYLVTKVVAVDRDSG
QNAWLSYSLLKSSEPGLFAVGLHTGEVRTARALLDRDALKQRLVVVVQDHGQPPLSATVTLTVAVADSIP
DVLADLGSLKPSADPDDSGLTLYLVVAVAAVSCVFLAFVTVLLALKLRRWHKSRLLHAEGSRLAGVPASH
FVGVDGVRAFLQTYSHEVSLTADSRKSHLIFSQPSYADTLISRESCEKSEPLLITQDLLETKGDPNLQVS
QSYNRSYHTEI


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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