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Report for CCDS4478.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4478.1 Public Homo sapiens 6 SERPINB9 24 110 108 CCDS HistoryNCBI Gene:5272Re-query CCDS DB by CCDS ID:4478.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4478.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000380698.5 ENSP00000370074.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000380698.5Link to Ensembl Protein Viewer:ENSP00000370074.4Re-query CCDS DB by Nucleotide ID:ENST00000380698Re-query CCDS DB by Protein ID:ENSP00000370074
Original member Current member NCBI NM_004155.6 NP_004146.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004155.6Link to Protein Sequence:NP_004146.1Re-query CCDS DB by Nucleotide ID:NM_004155Re-query CCDS DB by Protein ID:NP_004146Link to BLAST:NP_004146.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004146.1 376 P50453 376 100% 0 0

Chromosomal Locations for CCDS 4478.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 2890163 2890570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 2891833 2891988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 2893411 2893553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 2895391 2895508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 2896053 2896190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 2900444 2900611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1131 nt):
ATGGAAACTCTTTCTAATGCAAGTGGTACTTTTGCCATACGCCTTTTAAAGATACTGTGTCAAGATAACC
CTTCGCACAACGTGTTCTGTTCTCCTGTGAGCATCTCCTCTGCCCTGGCCATGGTTCTCCTAGGGGCAAA
GGGAAACACCGCAACCCAGATGGCCCAGGCACTGTCTTTAAACACAGAGGAAGACATTCATCGGGCTTTC
CAGTCGCTTCTCACTGAAGTGAACAAGGCTGGCACACAGTACCTGCTGAGAACGGCCAACAGGCTCTTTG
GAGAGAAAACTTGTCAGTTCCTCTCAACGTTTAAGGAATCCTGTCTTCAATTCTACCATGCTGAGCTGAA
GGAGCTTTCCTTTATCAGAGCTGCAGAAGAGTCCAGGAAACACATCAACACCTGGGTCTCAAAAAAGACC
GAAGGTAAAATTGAAGAGTTGTTGCCGGGTAGCTCAATTGATGCAGAAACCAGGCTGGTTCTTGTCAATG
CCATCTACTTCAAAGGAAAGTGGAATGAACCGTTTGACGAAACATACACAAGGGAAATGCCCTTTAAAAT
AAACCAGGAGGAGCAAAGGCCAGTGCAGATGATGTATCAGGAGGCCACGTTTAAGCTCGCCCACGTGGGC
GAGGTGCGCGCGCAGCTGCTGGAGCTGCCCTACGCCAGGAAGGAGCTGAGCCTGCTGGTGCTGCTGCCTG
ACGACGGCGTGGAGCTCAGCACGGTGGAAAAAAGTCTCACTTTTGAGAAACTCACAGCCTGGACCAAGCC
AGACTGTATGAAGAGTACTGAGGTTGAAGTTCTCCTTCCAAAATTTAAACTACAAGAGGATTATGACATG
GAATCTGTGCTTCGGCATTTGGGAATTGTTGATGCCTTCCAACAGGGCAAGGCTGACTTGTCGGCAATGT
CAGCGGAGAGAGACCTGTGTCTGTCCAAGTTCGTGCACAAGAGTTTTGTGGAGGTGAATGAAGAAGGCAC
CGAGGCAGCGGCAGCGTCGAGCTGCTTTGTAGTTGCAGAGTGCTGCATGGAATCTGGCCCCAGGTTCTGT
GCTGACCACCCTTTCCTTTTCTTCATCAGGCACAACAGAGCCAACAGCATTCTGTTCTGTGGCAGGTTCT
CATCGCCATAA

Translation (376 aa):
METLSNASGTFAIRLLKILCQDNPSHNVFCSPVSISSALAMVLLGAKGNTATQMAQALSLNTEEDIHRAF
QSLLTEVNKAGTQYLLRTANRLFGEKTCQFLSTFKESCLQFYHAELKELSFIRAAEESRKHINTWVSKKT
EGKIEELLPGSSIDAETRLVLVNAIYFKGKWNEPFDETYTREMPFKINQEEQRPVQMMYQEATFKLAHVG
EVRAQLLELPYARKELSLLVLLPDDGVELSTVEKSLTFEKLTAWTKPDCMKSTEVEVLLPKFKLQEDYDM
ESVLRHLGIVDAFQQGKADLSAMSAERDLCLSKFVHKSFVEVNEEGTEAAAASSCFVVAECCMESGPRFC
ADHPFLFFIRHNRANSILFCGRFSSP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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