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Report for CCDS3200.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3200.1 Public Homo sapiens 3 SERPINI2 24 110 108 CCDS HistoryNCBI Gene:5276Re-query CCDS DB by CCDS ID:3200.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 3200.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000264677.9 ENSP00000264677.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000264677.9Link to Ensembl Protein Viewer:ENSP00000264677.4Re-query CCDS DB by Nucleotide ID:ENST00000264677Re-query CCDS DB by Protein ID:ENSP00000264677
Original member Current member EBI ENST00000461846.5 ENSP00000417692.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000461846.5Link to Ensembl Protein Viewer:ENSP00000417692.1Re-query CCDS DB by Nucleotide ID:ENST00000461846Re-query CCDS DB by Protein ID:ENSP00000417692
Original member Current member EBI ENST00000471111.5 ENSP00000419407.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000471111.5Link to Ensembl Protein Viewer:ENSP00000419407.1Re-query CCDS DB by Nucleotide ID:ENST00000471111Re-query CCDS DB by Protein ID:ENSP00000419407
Original member Current member NCBI NM_001012303.3 NP_001012303.2 Accepted alive Link to Nucleotide Sequence:NM_001012303.3Link to Protein Sequence:NP_001012303.2Re-query CCDS DB by Nucleotide ID:NM_001012303Re-query CCDS DB by Protein ID:NP_001012303Link to BLAST:NP_001012303.2
Original member Current member NCBI NM_001394327.1 NP_001381256.1 Accepted alive Link to Nucleotide Sequence:NM_001394327.1Link to Protein Sequence:NP_001381256.1Re-query CCDS DB by Nucleotide ID:NM_001394327Re-query CCDS DB by Protein ID:NP_001381256Link to BLAST:NP_001381256.1
Original member Current member NCBI NM_006217.6 NP_006208.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006217.6Link to Protein Sequence:NP_006208.1Re-query CCDS DB by Nucleotide ID:NM_006217Re-query CCDS DB by Protein ID:NP_006208Link to BLAST:NP_006208.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001012303.2 405 O75830 405 100% 0 0
NP_001381256.1 405 O75830 405 100% 0 0
NP_006208.1 405 O75830 405 100% 0 0

Chromosomal Locations for CCDS 3200.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 167442109 167442185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 167446392 167446481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 167449316 167449402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 167452936 167453033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 167465206 167465398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 167465479 167465673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 167467055 167467285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 167471588 167471834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1218 nt):
ATGGACACAATCTTCTTGTGGAGTCTTCTATTGCTGTTTTTTGGAAGTCAAGCCTCAAGATGCTCAGCTC
AAAAAAATACCGAATTTGCAGTGGATCTTTATCAAGAGGTTTCCTTATCTCATAAGGACAACATTATATT
TTCACCCCTTGGAATAACTTTGGTTCTTGAGATGGTACAACTGGGAGCCAAAGGAAAAGCACAGCAGCAG
ATAAGACAAACTTTAAAACAACAGGAAACCTCAGCTGGGGAAGAATTTTTTGTACTGAAGTCATTTTTCT
CTGCCATCTCAGAGAAAAAACAAGAATTTACATTTAATCTTGCCAATGCCCTCTACCTTCAAGAAGGATT
CACTGTGAAAGAACAGTATCTCCATGGCAACAAGGAATTTTTTCAGAGTGCTATAAAACTGGTGGATTTT
CAAGATGCAAAGGCTTGTGCAGAGATGATAAGTACCTGGGTAGAAAGAAAAACAGATGGAAAAATTAAAG
ACATGTTTTCAGGGGAAGAATTTGGCCCTCTGACTCGGCTTGTCCTGGTGAATGCTATTTATTTCAAAGG
AGATTGGAAACAGAAATTCAGAAAAGAGGACACACAGCTGATAAATTTTACTAAGAAAAATGGTTCAACT
GTCAAAATTCCAATGATGAAGGCTCTTCTGAGAACAAAATATGGTTATTTTTCTGAATCTTCCCTGAACT
ACCAAGTTTTAGAATTGTCTTACAAAGGTGATGAATTTAGCTTAATTATCATACTTCCTGCAGAAGGTAT
GGATATAGAAGAAGTGGAAAAACTAATTACTGCTCAACAAATCCTAAAATGGCTCTCTGAGATGCAAGAA
GAGGAAGTAGAAATAAGCCTCCCTAGATTTAAAGTAGAACAAAAAGTAGACTTCAAAGACGTTTTGTATT
CTTTGAACATAACCGAGATATTTAGTGGTGGCTGCGACCTTTCTGGAATAACAGATTCATCTGAAGTGTA
TGTTTCCCAAGTGACGCAAAAAGTTTTCTTTGAGATAAATGAAGATGGTAGTGAAGCTGCAACATCAACT
GGCATACACATCCCTGTGATCATGAGTCTGGCTCAAAGCCAATTTATAGCAAATCATCCATTTCTGTTTA
TTATGAAGCATAATCCAACAGAATCAATTCTGTTTATGGGAAGAGTGACAAATCCTGACACCCAGGAGAT
AAAAGGAAGAGATTTAGATTCACTGTGA

Translation (405 aa):
MDTIFLWSLLLLFFGSQASRCSAQKNTEFAVDLYQEVSLSHKDNIIFSPLGITLVLEMVQLGAKGKAQQQ
IRQTLKQQETSAGEEFFVLKSFFSAISEKKQEFTFNLANALYLQEGFTVKEQYLHGNKEFFQSAIKLVDF
QDAKACAEMISTWVERKTDGKIKDMFSGEEFGPLTRLVLVNAIYFKGDWKQKFRKEDTQLINFTKKNGST
VKIPMMKALLRTKYGYFSESSLNYQVLELSYKGDEFSLIIILPAEGMDIEEVEKLITAQQILKWLSEMQE
EEVEISLPRFKVEQKVDFKDVLYSLNITEIFSGGCDLSGITDSSEVYVSQVTQKVFFEINEDGSEAATST
GIHIPVIMSLAQSQFIANHPFLFIMKHNPTESILFMGRVTNPDTQEIKGRDLDSL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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