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Report for CCDS1302.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1302.1 Public Homo sapiens 1 PIGC 24 110 108 CCDS HistoryNCBI Gene:5279Re-query CCDS DB by CCDS ID:1302.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1302.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000344529.5 ENSP00000356701.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000344529.5Link to Ensembl Protein Viewer:ENSP00000356701.3Re-query CCDS DB by Nucleotide ID:ENST00000344529Re-query CCDS DB by Protein ID:ENSP00000356701
Original member Current member EBI ENST00000367728.1 ENSP00000356702.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000367728.1Link to Ensembl Protein Viewer:ENSP00000356702.1Re-query CCDS DB by Nucleotide ID:ENST00000367728Re-query CCDS DB by Protein ID:ENSP00000356702
Original member Current member NCBI NM_002642.4 NP_002633.1 Accepted alive Link to Nucleotide Sequence:NM_002642.4Link to Protein Sequence:NP_002633.1Re-query CCDS DB by Nucleotide ID:NM_002642Re-query CCDS DB by Protein ID:NP_002633Link to BLAST:NP_002633.1
Original member Current member NCBI NM_153747.2 NP_714969.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_153747.2Link to Protein Sequence:NP_714969.1Re-query CCDS DB by Nucleotide ID:NM_153747Re-query CCDS DB by Protein ID:NP_714969Link to BLAST:NP_714969.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_002633.1 297 Q92535 297 100% 0 0
NP_714969.1 297 Q92535 297 100% 0 0

Chromosomal Locations for CCDS 1302.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 172441729 172442622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (894 nt):
ATGTATGCTCAACCTGTGACTAACACCAAGGAGGTCAAGTGGCAGAAGGTCTTGTATGAGCGACAGCCCT
TTCCTGATAACTATGTGGACCGGCGATTCCTGGAAGAGCTCCGGAAAAACATCCATGCTCGGAAATACCA
ATATTGGGCTGTGGTATTTGAGTCCAGTGTGGTGATCCAGCAGCTGTGCAGTGTTTGTGTTTTTGTGGTT
ATCTGGTGGTATATGGATGAGGGTCTTCTGGCCCCCCATTGGCTTTTAGGGACTGGTCTGGCTTCTTCAC
TGATTGGGTATGTTTTGTTTGATCTCATTGATGGAGGTGAAGGGCGGAAGAAGAGTGGGCAGACCCGGTG
GGCTGACCTGAAGAGTGCCCTAGTCTTCATTACTTTCACTTATGGGTTTTCACCAGTGCTGAAGACCCTT
ACAGAGTCTGTCAGCACTGACACCATCTATGCCATGTCAGTCTTCATGCTGTTAGGCCATCTCATCTTTT
TTGACTATGGTGCCAATGCTGCCATTGTATCCAGCACACTATCCTTGAACATGGCCATCTTTGCTTCTGT
ATGCTTGGCATCACGTCTTCCCCGGTCCCTGCATGCCTTCATCATGGTGACATTTGCCATTCAGATTTTT
GCCCTGTGGCCCATGTTGCAGAAGAAACTAAAGGCATGTACTCCCCGGAGCTATGTGGGGGTCACACTGC
TTTTTGCATTTTCAGCCGTGGGAGGCCTACTGTCCATTAGTGCTGTGGGAGCCGTACTCTTTGCCCTTCT
GCTGATGTCTATCTCATGTCTGTGTCCATTCTACCTCATTCGCTTGCAGCTTTTTAAAGAAAACATTCAT
GGGCCTTGGGATGAAGCTGAAATCAAGGAAGACTTGTCCAGGTTCCTCAGTTAA

Translation (297 aa):
MYAQPVTNTKEVKWQKVLYERQPFPDNYVDRRFLEELRKNIHARKYQYWAVVFESSVVIQQLCSVCVFVV
IWWYMDEGLLAPHWLLGTGLASSLIGYVLFDLIDGGEGRKKSGQTRWADLKSALVFITFTYGFSPVLKTL
TESVSTDTIYAMSVFMLLGHLIFFDYGANAAIVSSTLSLNMAIFASVCLASRLPRSLHAFIMVTFAIQIF
ALWPMLQKKLKACTPRSYVGVTLLFAFSAVGGLLSISAVGAVLFALLLMSISCLCPFYLIRLQLFKENIH
GPWDEAEIKEDLSRFLS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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