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Report for CCDS22677.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22677.1 Public Mus musculus 8 Ldhd 23 108 98 CCDS HistoryNCBI Gene:52815Re-query CCDS DB by CCDS ID:22677.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22677.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000070004.3 ENSMUSP00000068086.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000070004.3Link to Ensembl Protein Viewer:ENSMUSP00000068086.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000070004Re-query CCDS DB by Protein ID:ENSMUSP00000068086
Original member NCBI NM_027570.4 NP_081846.3 Updated not alive Link to Nucleotide Sequence:NM_027570.4Link to Protein Sequence:NP_081846.3Re-query CCDS DB by Nucleotide ID:NM_027570Re-query CCDS DB by Protein ID:NP_081846
Current member NCBI NM_027570.5 NP_081846.3 Accepted alive Link to Nucleotide Sequence:NM_027570.5Link to Protein Sequence:NP_081846.3Re-query CCDS DB by Nucleotide ID:NM_027570Re-query CCDS DB by Protein ID:NP_081846Link to BLAST:NP_081846.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081846.3 484 Q7TNG8 484 100% 0 0

Chromosomal Locations for CCDS 22677.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 111627025 111627190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 111627278 111627389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 111627488 111627578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 111628099 111628226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 111628310 111628438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 111628521 111628720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 111628986 111629145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 111629281 111629422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 111629606 111629747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 111629943 111630055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 111630239 111630310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1455 nt):
ATGGCCATGCTCCTTCGGGTGGCCACCCAGAGGCTGTCTCCCTGGAGGAGTTTCTGCTCCAGGGGGTCGC
AGGGTGGACTCAGCCAGGACTTTGTGGAGGCTCTGAAGGCAGTTGTAGGGAGCCCCCACGTGTCCACTGC
TTCTGCAGTCAGAGAGCAACACGGGCATGATGAATCGATGCACAGGTGTCAACCTCCTGATGCTGTGGTT
TGGCCTCAGAATGTGGACCAGGTCAGCCGAGTGGCAAGCCTGTGCTACAATCAAGGTGTTCCCATCATCC
CATTTGGCACAGGCACCGGTGTTGAGGGGGGAGTCTGTGCTGTGCAGGGTGGAGTGTGCATCAACCTGAC
CCATATGGACCAGATCACGGAGCTGAATACAGAAGACTTCTCCGTGGTGGTGGAGCCTGGAGTCACCCGT
AAAGCTCTCAATACCCACCTGCGTGACAGTGGCCTTTGGTTTCCTGTTGACCCAGGCGCAGATGCTTCTC
TGTGTGGCATGGCAGCCACCGGGGCCTCGGGCACCAATGCTGTGCGCTATGGAACCATGCGGGACAACGT
GATTAACCTGGAGGTAGTGCTGCCTGACGGCAGGCTGCTTCACACCGCAGGCCGGGGCCGCCATTACAGG
AAGAGTGCAGCTGGCTACAATCTCACAGGACTCTTTGTGGGCTCTGAGGGGACCCTGGGCATCATTACAT
CAACCACCCTGCGCCTGCACCCTGCGCCGGAAGCAACGGTGGCTGCCACCTGTGCGTTCCCCAGTGTTCA
AGCGGCTGTGGACAGCACAGTTCAGATCCTCCAGGCTGCAGTGCCCGTGGCTCGCATTGAGTTCCTAGAT
GATGTCATGATGGATGCCTGCAACAGACACAGCAAACTTAACTGCCCCGTGGCACCCACGCTTTTCCTGG
AGTTCCACGGTTCCCAGCAGACACTGGCGGAACAGCTGCAGCGCACAGAGGCAATCACTCAGGATAATGG
TGGCTCTCACTTCTCCTGGGCCAAGGAGGCCGAAAAGCGCAATGAACTTTGGGCAGCGCGGCACAATGCT
TGGTATGCAGCCTTGGCCCTGAGTCCAGGAAGTAAGGCCTATTCCACGGACGTGTGTGTACCCATCTCCC
GGCTGCCAGAGATCTTGGTAGAGACCAAGGAGGAGATTAAAGCTTCAAAACTCACAGGAGCCATCGTTGG
GCATGTGGGTGATGGCAACTTTCACTGCATCCTCCTGGTCGACCCAGATGATGCAGAGGAGCAGAGGAGG
GTCAAGGCCTTTGCAGAAAATCTGGGCAGGCGGGCCCTGGCACTCGGTGGGACATGCACTGGAGAACATG
GCATCGGACTGGGCAAGCGACAGCTGCTCCAAGAGGAAGTGGGCCCCGTGGGCGTGGAGACCATGCGGCA
GCTCAAAAACACACTGGATCCCCGTGGTCTCATGAACCCAGGCAAAGTGCTATGA

Translation (484 aa):
MAMLLRVATQRLSPWRSFCSRGSQGGLSQDFVEALKAVVGSPHVSTASAVREQHGHDESMHRCQPPDAVV
WPQNVDQVSRVASLCYNQGVPIIPFGTGTGVEGGVCAVQGGVCINLTHMDQITELNTEDFSVVVEPGVTR
KALNTHLRDSGLWFPVDPGADASLCGMAATGASGTNAVRYGTMRDNVINLEVVLPDGRLLHTAGRGRHYR
KSAAGYNLTGLFVGSEGTLGIITSTTLRLHPAPEATVAATCAFPSVQAAVDSTVQILQAAVPVARIEFLD
DVMMDACNRHSKLNCPVAPTLFLEFHGSQQTLAEQLQRTEAITQDNGGSHFSWAKEAEKRNELWAARHNA
WYAALALSPGSKAYSTDVCVPISRLPEILVETKEEIKASKLTGAIVGHVGDGNFHCILLVDPDDAEEQRR
VKAFAENLGRRALALGGTCTGEHGIGLGKRQLLQEEVGPVGVETMRQLKNTLDPRGLMNPGKVL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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