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Report for CCDS20738.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20738.1 Public Mus musculus 7 Syt5 23 108 98 CCDS HistoryNCBI Gene:53420Re-query CCDS DB by CCDS ID:20738.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20738.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000065957.6 ENSMUSP00000070322.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000065957.6Link to Ensembl Protein Viewer:ENSMUSP00000070322.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000065957Re-query CCDS DB by Protein ID:ENSMUSP00000070322
Original member Current member NCBI NM_001360421.1 NP_001347350.1 Accepted alive Link to Nucleotide Sequence:NM_001360421.1Link to Protein Sequence:NP_001347350.1Re-query CCDS DB by Nucleotide ID:NM_001360421Re-query CCDS DB by Protein ID:NP_001347350Link to BLAST:NP_001347350.1
Original member Current member NCBI NM_001360422.1 NP_001347351.1 Accepted alive Link to Nucleotide Sequence:NM_001360422.1Link to Protein Sequence:NP_001347351.1Re-query CCDS DB by Nucleotide ID:NM_001360422Re-query CCDS DB by Protein ID:NP_001347351Link to BLAST:NP_001347351.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001347350.1 386 Q9R0N5 386 100% 0 0
NP_001347351.1 386 Q9R0N5 386 100% 0 0

Chromosomal Locations for CCDS 20738.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 4540098 4540298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 4541080 4541213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 4541827 4541944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 4542191 4542358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 4542723 4542890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 4543018 4543137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 4545580 4545752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 4546233 4546311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1161 nt):
ATGTTCCCGGAACCCCCGACCCTGGGGTCTCCAGCGCCTAAGACACCTCCAGACTCCAGCCGCATCAGGC
AGGGCGCAGTGCCTGCCTGGGTCCTGGCTACCATCGTGCTGGGCTCGGGCCTCCTGGTCTTCAGCAGTTG
TTTCTGTCTCTACCGGAAGCGCTGTCGGAGACGGATGGGCAAAAAGAGTCAGGCCCAAGCCCAAGTCCAT
CTTCAGGAAGTGAAGGAGCTGGGCCGGAGTTACATAGATAAGGTTCAGCCTGAAATAGAGGAGCTGGACC
GGTCACCATCCATGCCTGGACAGCAGGTATCAGACAAACACCAGCTAGGCCGACTGCAGTATTCACTGGA
CTATGACTTCCAGACTGGCCAGCTCCTGGTGGGCATCTTGCAAGCTCAGGGACTGGCTGCGTTGGACCTA
GGAGGTTCCTCAGATCCCTATGTTAGTGTCTATCTGCTGCCAGACAAGCGGAGGCGACATGAGACCAAGG
TGCATCGGCAGACCCTGAATCCACACTTTGGAGAGACATTTGCCTTCAAGGTCCCATACGTGGAACTAGG
GGGCAGAGTGCTGGTCATGGCGGTGTATGACTTTGATCGGTTCTCCCGCAACGATGCCATCGGGGAGGTG
CGGGTGCCTATGAGTTCAGTGAACCTGGGGCGGCCGGTGCAGGCCTGGAGAGAGCTGCAGGTGGCTCCCA
AAGAGGAGCAAGAGAAACTGGGGGACATCTGCTTCTCTCTCCGTTATGTCCCCACGGCCGGGAAGCTCAC
CGTCATTGTCTTGGAAGCTAAAAACCTGAAGAAAATGGATGTAGGAGGACTCTCAGATCCCTATGTGAAG
GTGCACCTGCTCCAGGGAGGTAAAAAGGTTCGCAAGAAGAAAACCACCATTAAGAAGAACACCCTGAACC
CCTATTACAACGAGGCCTTCAGCTTTGAGGTGCCCTGTGACCAGGTGCAGAAAGTCCAGGTGGAGCTGAC
TGTTCTGGATTATGACAAACTGGGGAAGAATGAGGCCATCGGGAGAGTGGCGGTGGGCGCAGCAGTCGGT
GGGGCTGGCCTGCGGCACTGGGCTGACATGTTGGCCAACCCCAGGCGCCCCATTGCCCAGTGGCACTCTC
TGCGGCCCCCTGACAGAGCCAGGCCAATACCAGCACCCTGA

Translation (386 aa):
MFPEPPTLGSPAPKTPPDSSRIRQGAVPAWVLATIVLGSGLLVFSSCFCLYRKRCRRRMGKKSQAQAQVH
LQEVKELGRSYIDKVQPEIEELDRSPSMPGQQVSDKHQLGRLQYSLDYDFQTGQLLVGILQAQGLAALDL
GGSSDPYVSVYLLPDKRRRHETKVHRQTLNPHFGETFAFKVPYVELGGRVLVMAVYDFDRFSRNDAIGEV
RVPMSSVNLGRPVQAWRELQVAPKEEQEKLGDICFSLRYVPTAGKLTVIVLEAKNLKKMDVGGLSDPYVK
VHLLQGGKKVRKKKTTIKKNTLNPYYNEAFSFEVPCDQVQKVQVELTVLDYDKLGKNEAIGRVAVGAAVG
GAGLRHWADMLANPRRPIAQWHSLRPPDRARPIPAP


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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