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Report for CCDS72761.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
72761.1 Public Homo sapiens 1 HPCAL4 24 110 108 CCDS HistoryNCBI Gene:51440Re-query CCDS DB by CCDS ID:72761.1Re-query CCDS DB by GeneID:51440See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 72761.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000612703.3 ENSP00000484070.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000612703.3Link to Ensembl Protein Viewer:ENSP00000484070.1Re-query CCDS DB by Nucleotide ID:ENST00000612703Re-query CCDS DB by Protein ID:ENSP00000484070
Original member Current member NCBI NM_001282397.2 NP_001269326.1 Accepted alive Link to Nucleotide Sequence:NM_001282397.2Link to Protein Sequence:NP_001269326.1Re-query CCDS DB by Nucleotide ID:NM_001282397Re-query CCDS DB by Protein ID:NP_001269326Link to BLAST:NP_001269326.1

Chromosomal Locations for CCDS 72761.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 39682536 39682733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 39684442 39684603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (360 nt):
ATGGGGAAGACCAACAGCAAGCTGGCCCCCGAGGTGCTGGAGGACCTTGTTCAGAACACTGAGTTCAGCG
AGCAGGAGCTGAAGCAGTGGTACAAGGGCTTCCTGAAGGACTGCCCCAGCGGCATCCTCAACCTGGAGGA
GTTTCAGCAGCTCTACATCAAGGCAATCTACAAGATGGTGGGCACCGTGATCATGATGCGCATGAACCAG
GACGGGCTCACGCCCCAGCAGCGTGTGGACAAGATCTTCAAGAAGATGGACCAGGATAAGGACGACCAGA
TTACATTGGAGGAGTTCAAGGAGGCAGCCAAGAGTGACCCATCCATTGTGTTGCTGCTGCAGTGTGACAT
GCAGAAGTAG

Translation (119 aa):
MGKTNSKLAPEVLEDLVQNTEFSEQELKQWYKGFLKDCPSGILNLEEFQQLYIKAIYKMVGTVIMMRMNQ
DGLTPQQRVDKIFKKMDQDKDDQITLEEFKEAAKSDPSIVLLLQCDMQK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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