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Report for CCDS772.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
772.1 Public Homo sapiens 1 GPR88 24 110 108 CCDS HistoryNCBI Gene:54112Re-query CCDS DB by CCDS ID:772.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 772.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000315033.5 ENSP00000314223.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000315033.5Link to Ensembl Protein Viewer:ENSP00000314223.4Re-query CCDS DB by Nucleotide ID:ENST00000315033Re-query CCDS DB by Protein ID:ENSP00000314223
Original member Current member NCBI NM_022049.3 NP_071332.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_022049.3Link to Protein Sequence:NP_071332.2Re-query CCDS DB by Nucleotide ID:NM_022049Re-query CCDS DB by Protein ID:NP_071332Link to BLAST:NP_071332.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_071332.2 384 Q9GZN0 384 100% 0 0

Chromosomal Locations for CCDS 772.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 100538967 100540121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1155 nt):
ATGACCAACTCCTCCTCCACATCCACCTCCTCCACCACCGGTGGCTCGCTGCTGCTGCTCTGCGAGGAAG
AGGAGTCGTGGGCGGGCCGGCGCATCCCGGTGTCACTCCTGTATTCGGGCCTGGCCATCGGGGGCACGCT
GGCCAACGGCATGGTCATCTATCTCGTGTCGTCCTTCCGAAAGCTGCAGACCACCAGCAACGCCTTCATC
GTGAACGGCTGCGCCGCCGACCTCAGCGTCTGCGCCCTCTGGATGCCGCAGGAGGCGGTGCTCGGGCTCC
TGCCCACCGGCTCTGCGGAGCCCCCCGCAGACTGGGACGGCGCTGGGGGCAGCTACCGCCTGCTACGGGG
TGGGCTGCTGGGCCTCGGACTCACGGTGTCCCTCCTCTCCCACTGCCTCGTGGCCCTGAACCGCTACCTG
CTCATCACCCGGGCGCCCGCCACCTACCAGGCGCTGTACCAGAGGCGCCACACGGCGGGCATGCTGGCGC
TGTCCTGGGCGCTCGCCCTGGGCCTCGTGCTGCTGCTCCCGCCCTGGGCACCGCGGCCCGGCGCCGCGCC
ACCGCGAGTCCACTACCCGGCGCTGCTGGCCGCCGCGGCGCTGCTGGCGCAGACAGCTCTGCTGCTGCAC
TGCTACCTGGGCATCGTGCGCCGCGTGCGTGTCAGCGTCAAGCGGGTCAGCGTGCTCAACTTCCACCTGC
TGCACCAGTTGCCCGGCTGCGCCGCCGCCGCCGCCGCCTTCCCGGGCGCCCAGCACGCGCCGGGCCCCGG
TGGCGCCGCGCACCCGGCGCAGGCCCAGCCCCTGCCGCCCGCGCTGCACCCGCGGCGGGCACAGCGGCGT
CTCAGCGGCCTGTCGGTGCTGCTGCTCTGCTGCGTCTTCCTGCTGGCCACGCAGCCACTGGTGTGGGTGA
GCCTGGCCAGCGGCTTCTCGCTGCCGGTGCCCTGGGGAGTGCAGGCGGCCAGCTGGCTCCTGTGCTGCGC
CCTGTCCGCGCTCAATCCGCTGCTCTACACGTGGAGGAACGAGGAGTTCCGCCGCTCCGTGCGCTCAGTC
CTGCCGGGCGTCGGCGACGCGGCGGCCGCTGCCGTTGCCGCCACAGCCGTGCCCGCAGTGTCCCAGGCGC
AACTGGGCACCCGCGCCGCGGGCCAGCACTGGTAA

Translation (384 aa):
MTNSSSTSTSSTTGGSLLLLCEEEESWAGRRIPVSLLYSGLAIGGTLANGMVIYLVSSFRKLQTTSNAFI
VNGCAADLSVCALWMPQEAVLGLLPTGSAEPPADWDGAGGSYRLLRGGLLGLGLTVSLLSHCLVALNRYL
LITRAPATYQALYQRRHTAGMLALSWALALGLVLLLPPWAPRPGAAPPRVHYPALLAAAALLAQTALLLH
CYLGIVRRVRVSVKRVSVLNFHLLHQLPGCAAAAAAFPGAQHAPGPGGAAHPAQAQPLPPALHPRRAQRR
LSGLSVLLLCCVFLLATQPLVWVSLASGFSLPVPWGVQAASWLLCCALSALNPLLYTWRNEEFRRSVRSV
LPGVGDAAAAAVAATAVPAVSQAQLGTRAAGQHW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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