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Report for CCDS5393.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5393.1 Public Homo sapiens 7 CYCS 24 110 108 CCDS HistoryNCBI Gene:54205Re-query CCDS DB by CCDS ID:5393.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5393.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000305786.7 ENSP00000307786.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000305786.7Link to Ensembl Protein Viewer:ENSP00000307786.2Re-query CCDS DB by Nucleotide ID:ENST00000305786Re-query CCDS DB by Protein ID:ENSP00000307786
Original member Current member EBI ENST00000409409.5 ENSP00000386270.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000409409.5Link to Ensembl Protein Viewer:ENSP00000386270.1Re-query CCDS DB by Nucleotide ID:ENST00000409409Re-query CCDS DB by Protein ID:ENSP00000386270
Original member Current member EBI ENST00000409764.5 ENSP00000387279.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000409764.5Link to Ensembl Protein Viewer:ENSP00000387279.1Re-query CCDS DB by Nucleotide ID:ENST00000409764Re-query CCDS DB by Protein ID:ENSP00000387279
Original member Current member NCBI NM_018947.6 NP_061820.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018947.6Link to Protein Sequence:NP_061820.1Re-query CCDS DB by Nucleotide ID:NM_018947Re-query CCDS DB by Protein ID:NP_061820Link to BLAST:NP_061820.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061820.1 105 P99999 105 100% 0 0

Chromosomal Locations for CCDS 5393.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 25123701 25123849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 25123951 25124119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (318 nt):
ATGGGTGATGTTGAGAAAGGCAAGAAGATTTTTATTATGAAGTGTTCCCAGTGCCACACCGTTGAAAAGG
GAGGCAAGCACAAGACTGGGCCAAATCTCCATGGTCTCTTTGGGCGGAAGACAGGTCAGGCCCCTGGATA
CTCTTACACAGCCGCCAATAAGAACAAAGGCATCATCTGGGGAGAGGATACACTGATGGAGTATTTGGAG
AATCCCAAGAAGTACATCCCTGGAACAAAAATGATCTTTGTCGGCATTAAGAAGAAGGAAGAAAGGGCAG
ACTTAATAGCTTATCTCAAAAAAGCTACTAATGAGTAA

Translation (105 aa):
MGDVEKGKKIFIMKCSQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGYSYTAANKNKGIIWGEDTLMEYLE
NPKKYIPGTKMIFVGIKKKEERADLIAYLKKATNE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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