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Report for CCDS9222.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9222.1 Public Homo sapiens 12 RHOF 24 110 108 CCDS HistoryNCBI Gene:54509Re-query CCDS DB by CCDS ID:9222.1See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9222.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000267205.7 ENSP00000267205.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000267205.7Link to Ensembl Protein Viewer:ENSP00000267205.2Re-query CCDS DB by Nucleotide ID:ENST00000267205Re-query CCDS DB by Protein ID:ENSP00000267205
Original member Current member NCBI NM_019034.3 NP_061907.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_019034.3Link to Protein Sequence:NP_061907.2Re-query CCDS DB by Nucleotide ID:NM_019034Re-query CCDS DB by Protein ID:NP_061907Link to BLAST:NP_061907.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061907.2 211 Q9HBH0-1 211 100% 0 0

Chromosomal Locations for CCDS 9222.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 121779498 121779662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 121780872 121781006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 121781083 121781192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 121793152 121793239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 121793496 121793633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (636 nt):
ATGGATGCCCCCGGGGCCCTGGCCCAGACCGCCGCCCCCGGTCCGGGCAGGAAGGAGCTGAAGATCGTGA
TCGTGGGCGACGGCGGCTGCGGCAAGACCTCGCTGCTCATGGTGTACAGCCAGGGCTCCTTCCCCGAGCA
CTACGCCCCATCGGTGTTCGAGAAGTACACGGCCAGCGTGACCGTTGGCAGCAAGGAGGTGACCCTGAAC
CTCTACGACACGGCCGGGCAAGAAGACTATGACCGGCTGCGGCCCCTGTCCTACCAGAACACCCACCTCG
TGCTCATCTGCTATGACGTCATGAATCCCACCAGCTACGACAACGTCCTCATCAAGTGGTTCCCTGAGGT
CACGCATTTCTGCCGCGGGATCCCCATGGTGCTCATCGGCTGCAAGACAGACCTGAGGAAGGACAAGGAG
CAGCTGCGGAAGCTCCGGGCCGCCCAGCTGGAGCCCATCACCTACATGCAGGGCCTGAGCGCCTGCGAAC
AGATCCGAGCTGCTCTCTACCTGGAATGTTCCGCCAAGTTTCGGGAGAATGTGGAGGACGTCTTCCGGGA
GGCCGCCAAGGTGGCTCTCAGCGCTCTGAAGAAGGCGCAACGGCAGAAGAAGCGCCGGCTCTGCCTGCTG
CTCTGA

Translation (211 aa):
MDAPGALAQTAAPGPGRKELKIVIVGDGGCGKTSLLMVYSQGSFPEHYAPSVFEKYTASVTVGSKEVTLN
LYDTAGQEDYDRLRPLSYQNTHLVLICYDVMNPTSYDNVLIKWFPEVTHFCRGIPMVLIGCKTDLRKDKE
QLRKLRAAQLEPITYMQGLSACEQIRAALYLECSAKFRENVEDVFREAAKVALSALKKAQRQKKRRLCLL
L


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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