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Report for CCDS2121.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2121.2 Public Homo sapiens 2 CCDC93 24 110 108 CCDS HistoryNCBI Gene:54520Re-query CCDS DB by CCDS ID:2121.2See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 2121.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000376300.7 ENSP00000365477.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000376300.7Link to Ensembl Protein Viewer:ENSP00000365477.2Re-query CCDS DB by Nucleotide ID:ENST00000376300Re-query CCDS DB by Protein ID:ENSP00000365477
Original member Current member NCBI NM_019044.5 NP_061917.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_019044.5Link to Protein Sequence:NP_061917.3Re-query CCDS DB by Nucleotide ID:NM_019044Re-query CCDS DB by Protein ID:NP_061917Link to BLAST:NP_061917.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061917.3 631 Q567U6 631 100% 0 0

Chromosomal Locations for CCDS 2121.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 117920343 117920396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 117931037 117931150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 117935495 117935579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 117936702 117936739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 117939029 117939111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 117941189 117941297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 117944024 117944086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 117945529 117945582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 117946811 117946882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 117948105 117948186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 117949322 117949395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 117952373 117952435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 117958365 117958481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 117973908 117973994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 117974850 117974900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 117975188 117975280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 117977994 117978030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 117985969 117986069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 117995446 117995502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 117996264 117996362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 118000821 118000932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 118006722 118006816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 118008545 118008658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 118013954 118013995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1896 nt):
ATGGGGTTGCCCAGGGGGCCGGAGGGCCAGGGTCTCCCGGAGGTGGAAACAAGAGAAGATGAAGAACAAA
ATGTCAAGTTGACTGAAATTCTGGAGCTCTTGGTTGCAGCTGGGTATTTCAGGGCAAGAATTAAAGGCTT
ATCACCCTTTGACAAGGTAGTAGGAGGAATGACTTGGTGTATCACCACTTGCAACTTTGATGTAGATGTT
GATTTGCTCTTTCAAGAAAACTCTACGATAGGTCAAAAAATAGCTCTGTCAGAAAAAATTGTCTCGGTCC
TGCCAAGGATGAAATGCCCACACCAGCTGGAGCCCCACCAGATCCAGGGGATGGATTTTATTCACATATT
TCCTGTTGTTCAGTGGCTGGTGAAACGAGCTATAGAAACAAAAGAAGAGATGGGTGACTATATCCGCTCC
TACTCTGTATCCCAGTTCCAGAAGACTTACAGTCTCCCTGAGGATGATGACTTCATAAAGAGAAAAGAAA
AGGCCATCAAGACAGTTGTGGACCTCTCAGAAGTGTACAAGCCCCGTCGGAAATACAAACGCCACCAGGG
AGCAGAGGAGCTACTTGATGAAGAATCTCGAATCCATGCTACACTTTTGGAATATGGCAGGAGATATGGA
TTTAGCCGCCAGAGCAAAATGGAGAAGGCTGAGGACAAGAAAACGGCACTTCCAGCAGGGCTGTCAGCTA
CAGAAAAAGCTGATGCCCACGAGGAAGATGAGCTTCGAGCAGCTGAAGAGCAGCGTATTCAGTCGCTGAT
GACCAAGATGACCGCTATGGCAAATGAGGAGAGCCGTCTCACCGCAAGCTCCGTGGGCCAGATTGTGGGA
CTCTGCTCTGCTGAGATCAAGCAGATTGTGTCCGAGTATGCAGAGAAGCAGTCTGAGCTATCAGCTGAAG
AAAGTCCAGAAAAATTAGGAACCTCCCAGCTACATCGCCGGAAAGTCATTTCCTTGAACAAACAGATTGC
GCAAAAGACCAAACATCTTGAAGAGCTGCGAGCAAGTCACACCAGCCTACAAGCCAGATATAATGAAGCC
AAGAAAACGCTGACAGAGCTGAAGACTTACAGTGAGAAACTGGACAAAGAGCAAGCAGCCCTCGAGAAGA
TAGAATCCAAAGCTGATCCAAGTATCCTACAGAACCTGAGAGCACTTGTAGCCATGAATGAAAATCTGAA
AAGTCAAGAACAGGAATTTAAAGCACATTGTCGAGAGGAGATGACACGACTACAGCAAGAAATTGAAAAC
CTGAAAGCTGAGAGAGCACCACGTGGAGATGAAAAGACCCTCTCCAGTGGAGAGCCGCCTGGTACCTTGA
CCTCTGCAATGACTCATGACGAAGACCTAGACAGACGGTATAATATGGAGAAAGAGAAACTTTACAAGAT
ACGTTTACTACAGGCTCGAAGAAATCGAGAAATAGCAATTTTGCACCGCAAGATTGATGAAGTCCCTAGC
CGTGCCGAGCTAATACAGTATCAGAAGAGATTTATTGAACTCTACCGCCAGATTTCAGCAGTGCACAAAG
AAACCAAGCAGTTCTTCACTTTATATAATACCCTGGATGATAAAAAGGTTTATTTGGAAAAAGAGATTAG
TCTGCTGAACTCAATTCATGAGAACTTCTCACAGGCCATGGCCTCCCCTGCTGCCCGGGACCAGTTTTTA
CGTCAGATGGAACAGATTGTGGAAGGAATTAAGCAAAGTAGAATGAAGATGGAAAAGAAAAAGCAAGAGA
ACAAAATGAGAAGAGACCAGTTGAACGACCAGTACTTGGAGCTGTTAGAAAAGCAGAGGCTATACTTTAA
GACTGTGAAAGAGTTCAAGGAGGAGGGCCGCAAGAACGAGATGCTGCTGTCCAAGGTGAAAGCGAAGGCC
TCCTGA

Translation (631 aa):
MGLPRGPEGQGLPEVETREDEEQNVKLTEILELLVAAGYFRARIKGLSPFDKVVGGMTWCITTCNFDVDV
DLLFQENSTIGQKIALSEKIVSVLPRMKCPHQLEPHQIQGMDFIHIFPVVQWLVKRAIETKEEMGDYIRS
YSVSQFQKTYSLPEDDDFIKRKEKAIKTVVDLSEVYKPRRKYKRHQGAEELLDEESRIHATLLEYGRRYG
FSRQSKMEKAEDKKTALPAGLSATEKADAHEEDELRAAEEQRIQSLMTKMTAMANEESRLTASSVGQIVG
LCSAEIKQIVSEYAEKQSELSAEESPEKLGTSQLHRRKVISLNKQIAQKTKHLEELRASHTSLQARYNEA
KKTLTELKTYSEKLDKEQAALEKIESKADPSILQNLRALVAMNENLKSQEQEFKAHCREEMTRLQQEIEN
LKAERAPRGDEKTLSSGEPPGTLTSAMTHDEDLDRRYNMEKEKLYKIRLLQARRNREIAILHRKIDEVPS
RAELIQYQKRFIELYRQISAVHKETKQFFTLYNTLDDKKVYLEKEISLLNSIHENFSQAMASPAARDQFL
RQMEQIVEGIKQSRMKMEKKKQENKMRRDQLNDQYLELLEKQRLYFKTVKEFKEEGRKNEMLLSKVKAKA
S


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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