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Report for CCDS48461.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48461.1 Public Mus musculus 1 Cep170 23 108 98 CCDS HistoryNCBI Gene:545389Re-query CCDS DB by CCDS ID:48461.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48461.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000057037.12 ENSMUSP00000059562.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000057037.12Link to Ensembl Protein Viewer:ENSMUSP00000059562.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000057037Re-query CCDS DB by Protein ID:ENSMUSP00000059562
Original member Current member EBI ENSMUST00000195717.5 ENSMUSP00000141769.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000195717.5Link to Ensembl Protein Viewer:ENSMUSP00000141769.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000195717Re-query CCDS DB by Protein ID:ENSMUSP00000141769
Original member Current member NCBI NM_001099637.2 NP_001093107.2 Accepted alive Link to Nucleotide Sequence:NM_001099637.2Link to Protein Sequence:NP_001093107.2Re-query CCDS DB by Nucleotide ID:NM_001099637Re-query CCDS DB by Protein ID:NP_001093107Link to BLAST:NP_001093107.2

Chromosomal Locations for CCDS 48461.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 176735680 176735981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 176736844 176736895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 176737528 176737621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 176739081 176739169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 176739919 176740089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 176742501 176742648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 176749926 176750160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 176755166 176756983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 176758397 176758517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 176761351 176761500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 176769233 176769526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 176769713 176769870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 176774434 176774910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 176780261 176780395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 176782251 176782410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 176782497 176782555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 176788467 176788545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 176792536 176792625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 176793505 176793609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4737 nt):
ATGAGCCTAACATCCTGGTTTTTGGTGAGCAGTGGAGGCACTCGCCACAGGCTGCCACGAGAAATGATTT
TCGTTGGAAGAGACGACTGTGAGCTCATGCTTCAGTCCCGAAGTGTGGATAAACAACATGCAGTAATCAA
TTATGATGCATCTATGGATGAACATTTGGTGAAAGATTTAGGCAGCCTAAATGGGACCTTTGTGAATGAT
GTAAGGATACCAGAGCAGACGTACATCACTTTGAAGCTTGAAGATAAGCTGAGATTTGGATATGATACAA
ATCTCTTCACTGTAGTACGAGGAGAAATGAGGGTCCCTGAAGAAGCTCTTAAGCACGAGAAGTTTACCAT
TCAGCTTCAATTGTCCCAGAAGTCTTCAGAATCAGAATTACCAAAATCAGCAAGTGCCAAAGGCACAGAC
TCAAAAGTGGAGGCTGCTGCAGAAGTGCAGCCCAGAGCCACAGAAGCACTGAAATCTGAAGAGAAACCCA
TGGATGTCTCTGCTATGCCCCGAGGCACTCCATTATATGGGCAGCCGTCCTGGTGGGGAGACGCCGAGGA
GGATGAACAAAGAGCTTTCAAGGCCAATGGCAAGCCTGAGGGAAAAAGTCAGGAAGCTGGGGCTTCAGGG
TGCAGCACAGAGGCCAAGCACGTGGAGGGACAGTCTGCGGCTGCAAGTGAAGAAGCACTTTTTCCCTTCT
GTAGGGAGCCAAGTTATTTTGAAATTCCTACAAAAGAATTCCAGCAGCCATCACAAATAGCAGAGAGCAC
TATTCATGAGATTCCAACAAAAGACACACCAAGTTCCCATACAGCAGGTGCAGGGCATGCTTCATTTACC
ATTGAATTTGATGACAGTACGCCAGGAAAAGTAACTATTAGAGACCATGTGACAAAATTCACTTCTGACC
AGCGCCACAAGTCAAAGAAGGCCTCTCCAGGAACTCAAGACTTGCCAGGAATTCAGACAGGAATGATGGC
ACCAGAAAATAAAGTAGCTGACTGGCTAGCCCAAAACAACCCTCCTCAAATGGTGTGGGAAAGAACAGAG
GAGGATTCCAAGAGCATTAAAAGTGATGTTCCTGTGTACTTGAAAAGGTTGAAAGGAAACAAACATGATG
ATGGTACACAGAGTGATTCAGAGAATGCTGGGGCACACAGGCGCTGTAGCAAGCGTGCAACTCTGGAGGA
ACATTTACGCCGCCATCACTCAGAGCAGAAAAAGAAGGCCCAGTCCACCGAGAAGCATCAAGAACAGGCT
GCTACTAGCTCTACGCATCACAGAGGGGGGCATGGTGTTCCACATGGGAAATTGTTAAAACAGAAATCAG
AGGAGCCATCGGTGTCACTACCCTTCCTACAAACTGCATTATTAAGAAGTTCAGGGAGTCTTGGGCACAG
ACCAAGCCAGGAGATGGATGTAATGTTAAAAAATCAAGCTACTTCTGCCTCTTCAGAAAAGGATAATGAT
GATGACCAAAGTGACAAGGGTACTTATACCATTGAGTTAGAGAATCCCAACAGTGAGGAGGTGGAAGCAA
GAAAAATGATTGACAAGGTATTTGGAGTAGATGACAATCAGGATTATAATAGGCCTATTATCAATGAAAA
GCATAAAGGTCTCATAAAAGACTGGGCTCTCAACTCTGCTGCAGTAGTAATGGAAGAAAGAAAGCCATTG
AGTACACCTGGGTTTCATAACTCAGAGGAAGCCATATCTTCATCTGGAAGCAAACGTTGGGTTTCACAAT
GGGCTAGTTTGGCTGCTAATCATACAAGGCATGATCCAGAAGAAAGGTTAATGGAATTGTCTGCAACTGT
AGAAAACGAGACAGATACTGGTGACGCTGGTGTTTCCCTAAGAAGTACTAGTTGTACAACTTCCTTGGCT
AGTCAGGGAGAGAGGAAGAGGCGAACTCTTCCCCAGCTCCCAAATGAAGAGAAGCTACTCGAGAGCTCCA
GAGCGAAGGTCGTTCCACAGAGGTCAGAGATAGGAGAAAAGCAAGACACGGAACTGCAGGAAAAAGAAGC
CCAGGTATACCAAAGCGAGAAGCACGATGCAGACCGAGGCCTGAGTAAAATGAGCAGGGCAGTCAATGGT
GAGAGTCCTAAAACTGGTGGAGATGGTAAAGCCCTCCTTCACTCAGGAAGCTCATCTAGCAAGGAGAAGA
GTGAGACGGAAAAGGAAACTTCTTTGGTAAAACAAACATTGGCTAAAATGCAGCAGCAAGAGCAAAAGGA
GCAGGCCCAGTGGACTCCTACTAAGTTTCCTTCAAAAAATGCTTTAGGCCATATAGATAAATGTAGGGAG
GAATCTTCTAAGCAAGAGTCCCAACTCTTAGAAAAAGTTTCAGGACATTCTACGAGCAAAGGAGACAGAG
TAATACAAAATGAAAGCAAGAGAAGAAAAGCTGAGGAAATTCCAAAATGCCAGGCCTCAAAAGGAGACAA
GAAAGAGTCTTCCAAATCGTTAGTGCGCCAAGGGAGTTTCACCATAGACAAGCCCAGTTCCAACATCCCC
ATAGAACTTATCCCCCATATCAATAAGCAGAATTCATCTGTACCCACTGCCTTAGCACTGACGTCTGCAA
GTAGACTCCGAGAAAGGAGTGACTCTTTGGATACTGATTCTAGCATGGACACAACCTTGATTCTAAAAGA
CACAGAAGCAGTGATGGCTTTTCTAGAAGCTAAACTGCGAGAAGATAATAATAAAACTGATGAAGGCCCA
GATACTCCCAGTTACAATAGAGACAATTCAATTTCCCCAGAGTCTGATGTAGACACAGCCAGTACAATTA
GTCTGGTTACTGGAGAGACAGAAAGAAAGTCCACGCAAAAGCGGAAGAGTTTCACTAGTCTCTATAAAGA
CAGGTGTTCCACGAGTTCCCCATCCAAAGATGTTACTAAGTCAGGCAGTAGGGAGAAAATTGAAAAGAAA
GCAAAAAGCCGCTCTGCAGATATAGGTGCAAGAGCAGATGGTCGCAAATTTGTGCAGTCCAGTGGAAGAA
TCCGGCAGCCTTCCATAGACTTAACAGACGATGACCAGACCTCTAGTGTGCCTCATTCTGCTATTTCTGA
CATTATGTCATCTGACCAGGAAACATACTCCTGCAAATCTCATGGACGGACTCCACTTACCTCAGCCGAT
GAACACAACATACATTCCAAACTGGAGGGAGGCAAAGCAACAAAGTCTAAGACTTCTCCTGTTGCCTCTG
GTTCAACAAGCAAATCCACTACTCTCCCAAGGCCACGGCCCACCCGGACTTCCCTCCTGCGAAGAGCCCG
GCTTGGTGAAGCTTCTGACAGTGAACTTGCTGATGCTGACAAAGCATCTGTTGCTTCTGAAGTGTCCACT
ACAAGTTCCACATCAAAACCACCCACAGGAAGGCGAACCATCTCTAGGATTGATTTATTGGCTCAGCCTC
GAAGAACAAGACTTGGCTCATTATCTGCCCGTAGTGACTCTGAAGCAACAATTTCAAGAAGCAGCGCATC
TGCACGCACCGCAGAAGCTGTCATTAGGAGCGGAGCCAGGCTAGTGCCATCAGATAAACTTTCTCCTAGA
ACTCGAGCTAACAGTATCTCTCGGCTCTCCGACTCCAAGGTCAAGAGCATGAGCTCCACTCACGGCTCTC
CTTCAGTAAATTCAAGATGGAGGCGCTTTCCTACTGATTATGCTTCCACCTCAGAAGATGAATTTGGATC
AAACCGTAATTCCCCTAAACATACTCGTCTACGTACTTCTCCAGCCCTGAAAACCACTCGCATGCAGAGT
ACTGGATCAGCAATGCCTGCTAGTTCTTCATTCAAGCACCGAATTAAAGAACAGGAAGATTATATCCGAG
ATTGGACTGCCCATCGAGAAGAGATAGCCAGGATCAGCCAAGATCTTGCTCTCATTGCTCGGGAGATCAA
CGACGTAGCAGGAGAAATAGATTCAGTGACTTCCTCAGGCACGGCCCCGAGTACCACAGTAAGCACTGCA
GCCACCACCCCTGGCTCTGCCATAGACACTAGAGAAGAGTTGGTTGATCGTGTTTTTGATGAAAGTCTCA
ACTTCCGAAAGATACCTCCATTAGTTCATTCTAAAACACCAGAAGGAAACAACGGTCGGTCTGTTGACTC
GAGGCCTCAGCCAGCCGAGCATCCTGATCACTTAACAATTACAAGACGGAGAACCTGGAGTAGGGATGAA
GTCATGGGAGATAATCTGCTATTGTCATCAGTCTTTCAGTTCTCTAGGAAGATTAGACAATCCATTGATA
AAACAGCTGGGAAAATCAGAATATTGTTTAAAGACAAAGACCGGAACTGGGATGACATAGAAAACAAGCT
AAGAGCTGAAAGTGAAGTCCCTATCGTTAAAACTTCAAGCATGGAGATTTCTTCTATTTTACAGGAGCTT
AAAAGAGTTGAAAAACAGTTGCAAGTGATAAATGCCATGATTGACCCAGATGGGACTTTGGAGGCTCTTA
ACAACATGGGATTTCCCAATGCTATCCTGCCATCTCCACCAAAACAGAAGTCCAGCCCTGTTAATAACCA
CAGCAGCCCTAGTCAGACGCCAGCACTTTGCCCACCAGAAACTAGAGCCCTACACCCTGCTGCTGCGGGA
GTGGCAGCAGCAGCCTCCACTGAGTTTGAGAATGCTGAATCTGAGGCTGATTTCAGTATCCATTTCAATA
GGTTCAACCCTGATGGGGAAGAGGAGGATGTTACAGTACACGAATGA

Translation (1578 aa):
MSLTSWFLVSSGGTRHRLPREMIFVGRDDCELMLQSRSVDKQHAVINYDASMDEHLVKDLGSLNGTFVND
VRIPEQTYITLKLEDKLRFGYDTNLFTVVRGEMRVPEEALKHEKFTIQLQLSQKSSESELPKSASAKGTD
SKVEAAAEVQPRATEALKSEEKPMDVSAMPRGTPLYGQPSWWGDAEEDEQRAFKANGKPEGKSQEAGASG
CSTEAKHVEGQSAAASEEALFPFCREPSYFEIPTKEFQQPSQIAESTIHEIPTKDTPSSHTAGAGHASFT
IEFDDSTPGKVTIRDHVTKFTSDQRHKSKKASPGTQDLPGIQTGMMAPENKVADWLAQNNPPQMVWERTE
EDSKSIKSDVPVYLKRLKGNKHDDGTQSDSENAGAHRRCSKRATLEEHLRRHHSEQKKKAQSTEKHQEQA
ATSSTHHRGGHGVPHGKLLKQKSEEPSVSLPFLQTALLRSSGSLGHRPSQEMDVMLKNQATSASSEKDND
DDQSDKGTYTIELENPNSEEVEARKMIDKVFGVDDNQDYNRPIINEKHKGLIKDWALNSAAVVMEERKPL
STPGFHNSEEAISSSGSKRWVSQWASLAANHTRHDPEERLMELSATVENETDTGDAGVSLRSTSCTTSLA
SQGERKRRTLPQLPNEEKLLESSRAKVVPQRSEIGEKQDTELQEKEAQVYQSEKHDADRGLSKMSRAVNG
ESPKTGGDGKALLHSGSSSSKEKSETEKETSLVKQTLAKMQQQEQKEQAQWTPTKFPSKNALGHIDKCRE
ESSKQESQLLEKVSGHSTSKGDRVIQNESKRRKAEEIPKCQASKGDKKESSKSLVRQGSFTIDKPSSNIP
IELIPHINKQNSSVPTALALTSASRLRERSDSLDTDSSMDTTLILKDTEAVMAFLEAKLREDNNKTDEGP
DTPSYNRDNSISPESDVDTASTISLVTGETERKSTQKRKSFTSLYKDRCSTSSPSKDVTKSGSREKIEKK
AKSRSADIGARADGRKFVQSSGRIRQPSIDLTDDDQTSSVPHSAISDIMSSDQETYSCKSHGRTPLTSAD
EHNIHSKLEGGKATKSKTSPVASGSTSKSTTLPRPRPTRTSLLRRARLGEASDSELADADKASVASEVST
TSSTSKPPTGRRTISRIDLLAQPRRTRLGSLSARSDSEATISRSSASARTAEAVIRSGARLVPSDKLSPR
TRANSISRLSDSKVKSMSSTHGSPSVNSRWRRFPTDYASTSEDEFGSNRNSPKHTRLRTSPALKTTRMQS
TGSAMPASSSFKHRIKEQEDYIRDWTAHREEIARISQDLALIAREINDVAGEIDSVTSSGTAPSTTVSTA
ATTPGSAIDTREELVDRVFDESLNFRKIPPLVHSKTPEGNNGRSVDSRPQPAEHPDHLTITRRRTWSRDE
VMGDNLLLSSVFQFSRKIRQSIDKTAGKIRILFKDKDRNWDDIENKLRAESEVPIVKTSSMEISSILQEL
KRVEKQLQVINAMIDPDGTLEALNNMGFPNAILPSPPKQKSSPVNNHSSPSQTPALCPPETRALHPAAAG
VAAAASTEFENAESEADFSIHFNRFNPDGEEEDVTVHE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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