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Report for CCDS4878.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4878.1 Public Homo sapiens 6 PPP2R5D 24 110 108 CCDS HistoryNCBI Gene:5528Re-query CCDS DB by CCDS ID:4878.1Re-query CCDS DB by GeneID:5528See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4878.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000485511.6 ENSP00000417963.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000485511.6Link to Ensembl Protein Viewer:ENSP00000417963.1Re-query CCDS DB by Nucleotide ID:ENST00000485511Re-query CCDS DB by Protein ID:ENSP00000417963
Original member Current member NCBI NM_006245.4 NP_006236.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006245.4Link to Protein Sequence:NP_006236.1Re-query CCDS DB by Nucleotide ID:NM_006245Re-query CCDS DB by Protein ID:NP_006236Link to BLAST:NP_006236.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_006236.1 602 Q14738-1 602 100% 0 0

Chromosomal Locations for CCDS 4878.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 42984678 42984704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42989611 42989688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43006463 43006679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43006911 43007110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43007196 43007306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43007414 43007506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43007935 43008065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43008201 43008260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43008367 43008475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43008693 43008746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43009057 43009227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43009322 43009449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43010468 43010569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43010664 43010736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43010881 43010997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43011149 43011286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1809 nt):
ATGCCCTATAAACTGAAAAAGGAGAAGGAGCCCCCCAAGGTTGCCAAATGCACAGCCAAGCCTAGCAGCT
CGGGCAAGGATGGTGGAGGCGAGAACACTGAGGAGGCCCAGCCGCAGCCCCAGCCCCAGCCCCAGCCCCA
AGCCCAGTCTCAGCCACCGTCATCCAACAAGCGTCCCAGCAATAGCACGCCGCCCCCCACGCAGCTCAGC
AAAATCAAGTACTCAGGGGGGCCCCAGATTGTCAAGAAGGAGCGACGGCAAAGCTCCTCCCGCTTCAACC
TCAGCAAGAATCGGGAGCTGCAGAAGCTTCCTGCCCTGAAAGATTCGCCAACCCAGGAGCGGGAGGAGCT
GTTTATCCAGAAGCTACGCCAGTGCTGTGTCCTCTTTGACTTCGTGTCAGACCCACTCAGTGACCTCAAA
TTCAAGGAGGTGAAGCGGGCAGGACTCAACGAGATGGTGGAGTACATCACCCATAGCCGTGATGTTGTCA
CTGAGGCCATTTACCCTGAGGCTGTCACCATGTTTTCAGTGAACCTCTTCCGGACGCTGCCACCTTCATC
GAATCCCACAGGGGCTGAGTTTGACCCAGAGGAAGATGAGCCCACCCTGGAAGCTGCTTGGCCACATCTC
CAGCTCGTGTATGAGTTCTTCTTACGTTTCCTTGAGTCTCCTGATTTCCAGCCAAACATAGCCAAGAAGT
ACATCGACCAGAAGTTTGTACTTGCTCTCCTAGACCTATTTGACAGTGAGGATCCTCGAGAGCGGGACTT
CCTCAAGACCATTTTGCATCGCATCTATGGCAAGTTTTTGGGGCTCCGGGCTTATATCCGTAGGCAGATC
AACCACATCTTCTACAGGTTCATCTACGAGACGGAGCATCACAACGGGATTGCTGAGCTCCTGGAGATCC
TGGGCAGCATCATCAATGGCTTTGCCCTGCCCCTTAAAGAAGAGCACAAGATGTTCCTCATCCGTGTCCT
ACTTCCCCTTCACAAGGTCAAGTCCCTGAGTGTCTACCACCCTCAGCTGGCATACTGTGTGGTACAATTC
CTGGAGAAGGAGAGCAGTCTGACTGAGCCGGTAATTGTGGGACTTCTCAAGTTTTGGCCCAAGACCCACA
GCCCCAAGGAGGTGATGTTCTTGAATGAGCTGGAGGAGATTCTGGACGTCATTGAACCTTCTGAGTTCAG
CAAAGTGATGGAACCCCTCTTCCGCCAGCTGGCCAAGTGTGTCTCTAGCCCCCATTTCCAGGTGGCAGAG
CGTGCTCTCTATTACTGGAACAATGAGTACATCATGAGCCTGATAAGTGACAATGCTGCCCGAGTCCTCC
CCATCATGTTCCCTGCACTCTACAGGAACTCCAAGAGCCACTGGAACAAGACAATCCATGGACTGATCTA
TAATGCCCTGAAGTTGTTTATGGAAATGAATCAGAAGCTGTTTGATGACTGCACACAACAATACAAGGCA
GAGAAGCAGAAGGGCCGGTTCCGAATGAAGGAAAGGGAAGAGATGTGGCAAAAAATCGAGGAGCTGGCCC
GGCTTAATCCCCAGTATCCCATGTTCCGAGCCCCTCCACCACTGCCCCCTGTGTACTCGATGGAGACAGA
GACCCCCACAGCTGAGGACATCCAGCTTCTGAAGAGGACTGTGGAGACTGAGGCTGTTCAGATGCTAAAA
GACATCAAGAAGGAGAAAGTGCTGCTGCGGAGGAAGTCGGAGCTGCCCCAGGACGTGTACACCATCAAGG
CACTGGAGGCGCACAAGCGGGCGGAAGAGTTCCTAACTGCCAGCCAGGAGGCTCTCTGA

Translation (602 aa):
MPYKLKKEKEPPKVAKCTAKPSSSGKDGGGENTEEAQPQPQPQPQPQAQSQPPSSNKRPSNSTPPPTQLS
KIKYSGGPQIVKKERRQSSSRFNLSKNRELQKLPALKDSPTQEREELFIQKLRQCCVLFDFVSDPLSDLK
FKEVKRAGLNEMVEYITHSRDVVTEAIYPEAVTMFSVNLFRTLPPSSNPTGAEFDPEEDEPTLEAAWPHL
QLVYEFFLRFLESPDFQPNIAKKYIDQKFVLALLDLFDSEDPRERDFLKTILHRIYGKFLGLRAYIRRQI
NHIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKMFLIRVLLPLHKVKSLSVYHPQLAYCVVQF
LEKESSLTEPVIVGLLKFWPKTHSPKEVMFLNELEEILDVIEPSEFSKVMEPLFRQLAKCVSSPHFQVAE
RALYYWNNEYIMSLISDNAARVLPIMFPALYRNSKSHWNKTIHGLIYNALKLFMEMNQKLFDDCTQQYKA
EKQKGRFRMKEREEMWQKIEELARLNPQYPMFRAPPPLPPVYSMETETPTAEDIQLLKRTVETEAVQMLK
DIKKEKVLLRRKSELPQDVYTIKALEAHKRAEEFLTASQEAL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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