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Report for CCDS41709.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41709.1 Public Homo sapiens 11 SLC35F2 24 110 108 CCDS HistoryNCBI Gene:54733Re-query CCDS DB by CCDS ID:41709.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41709.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000525815.6 ENSP00000436785.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000525815.6Link to Ensembl Protein Viewer:ENSP00000436785.1Re-query CCDS DB by Nucleotide ID:ENST00000525815Re-query CCDS DB by Protein ID:ENSP00000436785
Original member Current member NCBI NM_017515.5 NP_059985.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017515.5Link to Protein Sequence:NP_059985.2Re-query CCDS DB by Nucleotide ID:NM_017515Re-query CCDS DB by Protein ID:NP_059985Link to BLAST:NP_059985.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_059985.2 374 Q8IXU6-1 374 100% 0 0

Chromosomal Locations for CCDS 41709.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 107792615 107792800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 107803001 107803155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 107804718 107804770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 107805359 107805515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 107806717 107806876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 107811667 107811794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 107815790 107815965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 107858658 107858767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1125 nt):
ATGGAGGCAGACTCGCCAGCGGGCCCCGGCGCCCCAGAGCCCCTCGCGGAGGGAGCGGCGGCCGAGTTCT
CCAGCCTGCTGCGCAGGATAAAAGGCAAACTCTTCACCTGGAATATTTTGAAAACAATTGCCCTGGGTCA
GATGTTGTCCTTGTGTATATGTGGGACAGCCATCACCAGCCAGTATTTGGCAGAAAGATACAAAGTGAAC
ACCCCCATGCTTCAGAGCTTTATCAATTATTGCTTGCTGTTCCTAATTTATACAGTGATGCTGGCATTTC
GATCAGGCAGTGATAACCTTTTAGTAATCTTGAAAAGAAAATGGTGGAAGTACATCCTGCTGGGACTAGC
AGATGTGGAAGCTAATTATGTGATCGTCAGAGCCTACCAGTACACAACTCTAACCAGTGTCCAGCTTTTG
GATTGCTTTGGGATTCCTGTGTTGATGGCTCTGTCATGGTTTATTCTTCATGCAAGATACAGAGTGATCC
ACTTCATCGCCGTGGCTGTCTGTCTGTTGGGTGTAGGAACCATGGTTGGTGCAGACATACTAGCAGGGAG
GGAAGACAATTCAGGGAGTGATGTATTGATTGGTGACATCTTGGTCCTTCTTGGGGCTTCCCTCTATGCC
ATTTCAAATGTTTGTGAGGAATACATCGTGAAGAAGCTGAGCAGACAGGAGTTTTTAGGAATGGTGGGCC
TGTTTGGAACAATTATCAGTGGTATACAGCTATTGATTGTGGAATATAAGGATATTGCCAGCATTCATTG
GGACTGGAAAATTGCCCTGCTGTTCGTGGCATTTGCCCTGTGTATGTTTTGCCTGTACAGCTTCATGCCA
TTGGTGATTAAAGTCACTAGTGCCACTTCCGTCAACCTGGGCATCCTGACAGCGGACCTCTACAGCCTTT
TTGTTGGACTCTTTCTGTTTGGCTATAAGTTTTCAGGACTCTACATCCTGTCCTTCACTGTCATCATGGT
GGGGTTTATCCTGTACTGCTCCACCCCTACTCGCACGGCCGAGCCGGCTGAAAGCAGCGTGCCTCCAGTC
ACCAGCATTGGGATTGACAACCTGGGGCTGAAGCTGGAGGAGAACCTCCAGGAGACCCACTCTGCTGTCT
TGTAG

Translation (374 aa):
MEADSPAGPGAPEPLAEGAAAEFSSLLRRIKGKLFTWNILKTIALGQMLSLCICGTAITSQYLAERYKVN
TPMLQSFINYCLLFLIYTVMLAFRSGSDNLLVILKRKWWKYILLGLADVEANYVIVRAYQYTTLTSVQLL
DCFGIPVLMALSWFILHARYRVIHFIAVAVCLLGVGTMVGADILAGREDNSGSDVLIGDILVLLGASLYA
ISNVCEEYIVKKLSRQEFLGMVGLFGTIISGIQLLIVEYKDIASIHWDWKIALLFVAFALCMFCLYSFMP
LVIKVTSATSVNLGILTADLYSLFVGLFLFGYKFSGLYILSFTVIMVGFILYCSTPTRTAEPAESSVPPV
TSIGIDNLGLKLEENLQETHSAVL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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