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Report for CCDS46500.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46500.1 Public Homo sapiens 2 INO80D 24 110 108 CCDS HistoryNCBI Gene:54891Re-query CCDS DB by CCDS ID:46500.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46500.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000403263.6 ENSP00000384198.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000403263.6Link to Ensembl Protein Viewer:ENSP00000384198.1Re-query CCDS DB by Nucleotide ID:ENST00000403263Re-query CCDS DB by Protein ID:ENSP00000384198
Original member Current member NCBI NM_017759.5 NP_060229.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017759.5Link to Protein Sequence:NP_060229.3Re-query CCDS DB by Nucleotide ID:NM_017759Re-query CCDS DB by Protein ID:NP_060229Link to BLAST:NP_060229.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060229.3 1027 Q53TQ3 1027 100% 0 0

Chromosomal Locations for CCDS 46500.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 206004368 206005533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 206007284 206007441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 206009577 206009794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 206017680 206017813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 206019736 206019845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 206028111 206028335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 206046504 206046612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 206056198 206056943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 206062799 206063016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3084 nt):
ATGTATGAAGGGAAACATATACACTTCTCTGAGGTTGACAATAAGCCCTTGTGCTCATATAGCCCCAAAC
TGTGCAAGCAGAGGCGACTCAACGGCTACGCCTTCTGTATCAGACACGTTCTGGAGGACAAGACTGCCCC
CTTCAAGCAATGTGAATATGTGGCCAAGTATAACAGCCAACGCTGCACCAACCCCATCCCCAAATCAGAG
GATCGTAGGTACTGCAACAGCCACTTGCAGGTACTTGGCTTTATCCCGAAAAAAGAGAGGAAGAAAAAGA
ATGATCCTATAGATGAGGTGAAGGTCAGGCACCAGATGGATACCATGGCCTTTAGCCTGACAGTGCCCAC
GTTGGCCTTGAAGATGCCCAACGGACTGGATGGAATGTCCCTCTCTCCACCTGGGGCAAGGGTCCCTCTC
CACTACCTGGAAACCGAATTGGAAGACCCATTTGCTTTCAATGAGGAAGATGATGACCTAAAGAAAGGGG
CAACTGTGAGAAAGAAGTTGCAGAGCAAGTTGGCCCAGAATCGGCAGCGCCAGAGAGAGACAGAGATTTT
AAAAGTTCGACAAGAGCACTTTAGTCCCCCTCCTGCACCTTCACAGCAGCAGCCTCCGCAGCAGCACTCC
CACCTGTCACCTTTATCTACTTCTTTAAAACCTCCAGCGCCACCGCAGGGTTCAGTCTGCAAGTCACCTC
AACCTCAGAACACCAGCCTACCAATGCAGGGAGTGGCACCCACCACACACACTATAGCACAAGCACGGCA
GTTGTCTCACAAGAGGCCTCTGCCCCTCCTGCCATCCAGTAGGGCTCCCACTGTGGACCCACCCAGGACT
GACCGGATCCTCATGAAAGCCACAGCCTTCTCTCCACACTTCTCATGTATAAGCCGACTGCAGAGACTGG
TGAAACTGTGCACCCAGAAACATCAGTTGGACACTGATCTGTTTCCCCATTTAGGTTTGGACTGGTCTGA
AGAGAGCGGAGAGGAACCAGAGGACTCAGAGCAGGCCTCGCCCTACCAGGTTGCATGGTCCATCCGGGAA
ACCCTCAGATATCAAAGACATGCGTCAGATGATGATGATGCGGAGAGTAGGAGCTCCAGGGTGACTCAAC
TTTGCACTTACTTTCAGCAGAAATATAAGCACCTCTGCCGCCTGGAGCGGGCAGAATCTCGTCAAAAGAA
ATGCCGGCATACGTTTAGGAAAGCTTTGCTGCAGGCGGCCAGTAAAGAACCAGAATGCACTGGTCAGTTA
ATACAAGAACTGCGGAGAGCTGCATGCAGTCGAACCAGCATAAGCCGGACCAAGCTGAGGGAGGTGGAAC
CAGCAGCATGCAGTGGAACCGTGAAGGGTGAACAGTGCGCTAACAAAGCCCTTCCATTCACCAGACATTG
TTTCCAACATATCCTCTTGAACCACTCTCAGCAGCTCTTCTCAAGTTGCACAGCCAAGTTTGCAGATGGA
CAGCAGTGCTCTGTGCCAGTTTTTGACATTACACATCAGACACCTCTGTGTGAAGAACATGCCAAAAAAA
TGGATAATTTCTTGAGAGGAGATAACTCCCGTAAAGTTCAGCACCAGCAGCAGAGGAAACCCAGGAAAAA
AACCAAGCCTCCTGCACTAACCAAAAAACACAAGAAGAAGAGAAGGCGTGGACCTCGTCGACCCCAAAAA
CCCATTCCACCTGCAGTCCCCCAAGGGAACCTCAGCATGCCCGCCAGCGTCTCACTGCCAGTGGAGGCCT
CTCACATCCGGAGCCCATCCACGCCAGAGCTGAGTGCTGATGAGTTGCCGGATGACATTGCCAATGAGAT
CACTGACATTCCACATGACTTGGAATTGAACCAGGAGGACTTTTCAGATGTCCTGCCACGGCTACCTGAT
GACTTACAAGATTTTGATTTTTTTGAAGGGAAGAATGGAGACCTCCTCCCAACTACCGAAGAGGCTGAGG
AGCTTGAACGGGCCTTGCAGGCTGTAACTTCTCTCGAGTGCCTGAGTACCATTGGGGTCCTTGCCCAGTC
AGATGGTGTGCCAGTCCAGGAGTTGTCAGATAGAGGAATAGGGGTGTTCTCCACAGGTACTGGAGCTTCA
GGAATACAATCCTTGAGCCGAGAGGTGAACACAGACCTAGGGGAGCTATTGAATGGGCGTATAGTACATG
ATAATTTTTCTAGTCTAGAGCTGGATGAGAACCTGCTCCGTTCTGCTACCTTGTCAAACCCACCTACACC
CCTGGCAGGGCAGATCCAGGGGCAGTTCTCTGCCCCAGCCAACGTTGGCCTTACTTCTGCCACTCTGATC
AGCCAGAGTGCACTTGGGGAGAGAGCCTTCCCAGGACAGTTTCATGGACTTCATGACGGCAGCCATGCCT
CCCAGAGGCCACATCCTGCCCAGCTGCTGAGCAAGGCAGATGACCTAATCACCTCACGACAGCAATACAG
CAGTGATCACTCACACTCCTCACCCCATGGAAGCCATTATGATAGTGAGCATGTGCCGTCTCCCTACAGT
GACCATATCACCTCTCCCCACACAACATCGTACTCTGGTGATAATATGGCAGCTACCTTTTCAGCAGAGA
TGCCCATCATGGCGCAGCACTTGCTCCCAACCCAACTTGAGGTGCCACTTGGAGGCGTGGTAAACCCCAG
AACTCACTGGGGCAATCTCCCTGTCAACCTTGGAGACCCCTCTCCATTTAGCAACCTTCTCGGCGCAGAT
GGACATCTTCTTTCCACTTCCCTATCCACGCCACCCACCACTTCGAACTCAGAGACCACACAGCCTGCCT
TCGCCACCGTGACCCCCAGCAGCTCCAGTGTGCTTCCGGGGTTACCACAGACCAGCTTCAGTGGCATGGG
GCCTTCTGCTGAACTAATGGCCTCCACCTCTCCCAAGCAGCAACTCCCTCAGTTCAGCGCAGCCTTTGGC
CACCAGCTGAGTTCTCACAGTGGCATTCCTAAGGACCTGCAGCCCAGCCACAGCTCTATAGCCCCTCCTA
CAGGCTTCACAGTAACAGGTGCCACAGCTACAAGTACCAATAATGCATCTTCTCCCTTTCCCTCCCCTAA
CTGA

Translation (1027 aa):
MYEGKHIHFSEVDNKPLCSYSPKLCKQRRLNGYAFCIRHVLEDKTAPFKQCEYVAKYNSQRCTNPIPKSE
DRRYCNSHLQVLGFIPKKERKKKNDPIDEVKVRHQMDTMAFSLTVPTLALKMPNGLDGMSLSPPGARVPL
HYLETELEDPFAFNEEDDDLKKGATVRKKLQSKLAQNRQRQRETEILKVRQEHFSPPPAPSQQQPPQQHS
HLSPLSTSLKPPAPPQGSVCKSPQPQNTSLPMQGVAPTTHTIAQARQLSHKRPLPLLPSSRAPTVDPPRT
DRILMKATAFSPHFSCISRLQRLVKLCTQKHQLDTDLFPHLGLDWSEESGEEPEDSEQASPYQVAWSIRE
TLRYQRHASDDDDAESRSSRVTQLCTYFQQKYKHLCRLERAESRQKKCRHTFRKALLQAASKEPECTGQL
IQELRRAACSRTSISRTKLREVEPAACSGTVKGEQCANKALPFTRHCFQHILLNHSQQLFSSCTAKFADG
QQCSVPVFDITHQTPLCEEHAKKMDNFLRGDNSRKVQHQQQRKPRKKTKPPALTKKHKKKRRRGPRRPQK
PIPPAVPQGNLSMPASVSLPVEASHIRSPSTPELSADELPDDIANEITDIPHDLELNQEDFSDVLPRLPD
DLQDFDFFEGKNGDLLPTTEEAEELERALQAVTSLECLSTIGVLAQSDGVPVQELSDRGIGVFSTGTGAS
GIQSLSREVNTDLGELLNGRIVHDNFSSLELDENLLRSATLSNPPTPLAGQIQGQFSAPANVGLTSATLI
SQSALGERAFPGQFHGLHDGSHASQRPHPAQLLSKADDLITSRQQYSSDHSHSSPHGSHYDSEHVPSPYS
DHITSPHTTSYSGDNMAATFSAEMPIMAQHLLPTQLEVPLGGVVNPRTHWGNLPVNLGDPSPFSNLLGAD
GHLLSTSLSTPPTTSNSETTQPAFATVTPSSSSVLPGLPQTSFSGMGPSAELMASTSPKQQLPQFSAAFG
HQLSSHSGIPKDLQPSHSSIAPPTGFTVTGATATSTNNASSPFPSPN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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