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Report for CCDS74055.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
74055.1 Public Homo sapiens 17 IKZF3 24 110 108 CCDS HistoryNCBI Gene:22806Re-query CCDS DB by CCDS ID:74055.1Re-query CCDS DB by GeneID:22806See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 74055.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000583368.1 ENSP00000462452.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000583368.1Link to Ensembl Protein Viewer:ENSP00000462452.1Re-query CCDS DB by Nucleotide ID:ENST00000583368Re-query CCDS DB by Protein ID:ENSP00000462452
Original member Current member EBI ENST00000623724.3 ENSP00000485515.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000623724.3Link to Ensembl Protein Viewer:ENSP00000485515.1Re-query CCDS DB by Nucleotide ID:ENST00000623724Re-query CCDS DB by Protein ID:ENSP00000485515
Original member Current member NCBI NM_001284514.2 NP_001271443.1 Accepted alive Link to Nucleotide Sequence:NM_001284514.2Link to Protein Sequence:NP_001271443.1Re-query CCDS DB by Nucleotide ID:NM_001284514Re-query CCDS DB by Protein ID:NP_001271443Link to BLAST:NP_001271443.1
Original member Current member NCBI NM_001284515.2 NP_001271444.1 Accepted alive Link to Nucleotide Sequence:NM_001284515.2Link to Protein Sequence:NP_001271444.1Re-query CCDS DB by Nucleotide ID:NM_001284515Re-query CCDS DB by Protein ID:NP_001271444Link to BLAST:NP_001271444.1
Original member Current member NCBI NM_001284516.1 NP_001271445.1 Accepted alive Link to Nucleotide Sequence:NM_001284516.1Link to Protein Sequence:NP_001271445.1Re-query CCDS DB by Nucleotide ID:NM_001284516Re-query CCDS DB by Protein ID:NP_001271445Link to BLAST:NP_001271445.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001271443.1 262 Q9UKT9-16 262 100% 0 0
NP_001271444.1 262 Q9UKT9-16 262 100% 0 0
NP_001271445.1 262 Q9UKT9-16 262 100% 0 0

Chromosomal Locations for CCDS 74055.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 39765790 39766493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 39777651 39777735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (789 nt):
ATGGGAAGTGAAAGAGCTCTCGTACTGGACAGATTAGCAAGCAATGTGGCAAAACGAAAAAGCTCAATGC
CTCAGAAATTCATTGGTGAGAAGCGCCACTGCTTTGATGTCAACTATAATTCAAGTTACATGTATGAGAA
AGAGAGTGAGCTCATACAGACCCGCATGATGGACCAAGCCATCAATAACGCCATCAGCTATCTTGGCGCC
GAAGCCCTGCGCCCCTTGGTCCAGACACCGCCTGCTCCCACCTCGGAGATGGTTCCAGTTATCAGCAGCA
TGTATCCCATAGCCCTCACCCGGGCTGAGATGTCAAACGGTGCCCCTCAAGAGCTGGAAAAGAAAAGCAT
CCACCTTCCAGAGAAGAGCGTGCCTTCTGAGAGAGGCCTCTCTCCCAACAATAGTGGCCACGACTCCACG
GACACTGACAGCAACCATGAAGAACGCCAGAATCACATCTATCAGCAAAATCACATGGTCCTGTCTCGGG
CCCGCAATGGGATGCCACTTCTGAAGGAGGTTCCCCGCTCTTACGAACTCCTCAAGCCCCCGCCCATCTG
CCCAAGAGACTCCGTCAAAGTGATCAACAAGGAAGGGGAGGTGATGGATGTGTATCGGTGTGACCACTGC
CGCGTCCTCTTCCTGGACTATGTGATGTTCACGATTCACATGGGCTGCCACGGCTTCCGTGACCCTTTCG
AGTGTAACATGTGTGGATATCGAAGCCATGATCGGTATGAGTTCTCGTCTCACATAGCCAGAGGAGAACA
CAGAGCCCTGCTGAAGTGA

Translation (262 aa):
MGSERALVLDRLASNVAKRKSSMPQKFIGEKRHCFDVNYNSSYMYEKESELIQTRMMDQAINNAISYLGA
EALRPLVQTPPAPTSEMVPVISSMYPIALTRAEMSNGAPQELEKKSIHLPEKSVPSERGLSPNNSGHDST
DTDSNHEERQNHIYQQNHMVLSRARNGMPLLKEVPRSYELLKPPPICPRDSVKVINKEGEVMDVYRCDHC
RVLFLDYVMFTIHMGCHGFRDPFECNMCGYRSHDRYEFSSHIARGEHRALLK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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