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Report for CCDS11902.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11902.1 Public Homo sapiens 18 RNF125 24 110 108 CCDS HistoryNCBI Gene:54941Re-query CCDS DB by CCDS ID:11902.1See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11902.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000217740.4 ENSP00000217740.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000217740.4Link to Ensembl Protein Viewer:ENSP00000217740.3Re-query CCDS DB by Nucleotide ID:ENST00000217740Re-query CCDS DB by Protein ID:ENSP00000217740
Original member Current member NCBI NM_017831.4 NP_060301.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017831.4Link to Protein Sequence:NP_060301.2Re-query CCDS DB by Nucleotide ID:NM_017831Re-query CCDS DB by Protein ID:NP_060301Link to BLAST:NP_060301.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060301.2 232 Q96EQ8 232 100% 0 0

Chromosomal Locations for CCDS 11902.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 32018864 32019027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 32037116 32037269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 32042179 32042273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 32045642 32045732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 32065902 32066009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 32068298 32068384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (699 nt):
ATGGGCTCCGTGCTGAGCACCGACAGCGGCAAATCGGCGCCCGCCTCTGCCACCGCGCGGGCCCTGGAGC
GCAGGAGGGACCCGGAGTTGCCCGTCACGTCCTTCGACTGCGCCGTGTGCCTTGAGGTGTTACACCAGCC
TGTCCGGACCCGCTGTGGCCACGTATTCTGCCGTTCCTGTATTGCTACCAGTCTAAAGAACAACAAGTGG
ACCTGTCCTTATTGCCGGGCATATCTTCCTTCAGAAGGAGTTCCAGCAACTGATGTAGCCAAAAGAATGA
AATCAGAGTATAAGAACTGCGCTGAGTGTGACACCCTGGTTTGCCTCAGTGAAATGAGGGCACATATTCG
GACTTGTCAGAAGTACATAGATAAGTATGGACCACTACAAGAACTTGAGGAGACAGCAGCAAGGTGTGTA
TGTCCCTTTTGTCAGAGGGAACTGTATGAAGACAGCTTGCTGGATCATTGTATTACTCATCACAGATCGG
AACGGAGGCCTGTGTTCTGTCCACTTTGCCGTTTAATACCCGATGAGAATCCAAGCAGCTTCAGTGGCAG
TTTAATAAGACATCTGCAAGTTAGTCACACTTTGTTTTATGATGATTTCATAGATTTTAATATAATTGAG
GAAGCTCTTATCCGAAGAGTCTTAGACCGGTCACTTCTTGAATATGTGAATCACTCGAACACCACATAA

Translation (232 aa):
MGSVLSTDSGKSAPASATARALERRRDPELPVTSFDCAVCLEVLHQPVRTRCGHVFCRSCIATSLKNNKW
TCPYCRAYLPSEGVPATDVAKRMKSEYKNCAECDTLVCLSEMRAHIRTCQKYIDKYGPLQELEETAARCV
CPFCQRELYEDSLLDHCITHHRSERRPVFCPLCRLIPDENPSSFSGSLIRHLQVSHTLFYDDFIDFNIIE
EALIRRVLDRSLLEYVNHSNTT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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