NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS10753.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10753.1 Public Homo sapiens 16 LPCAT2 24 110 108 CCDS HistoryNCBI Gene:54947Re-query CCDS DB by CCDS ID:10753.1See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10753.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000262134.10 ENSP00000262134.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000262134.10Link to Ensembl Protein Viewer:ENSP00000262134.5Re-query CCDS DB by Nucleotide ID:ENST00000262134Re-query CCDS DB by Protein ID:ENSP00000262134
Original member Current member NCBI NM_017839.5 NP_060309.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017839.5Link to Protein Sequence:NP_060309.2Re-query CCDS DB by Nucleotide ID:NM_017839Re-query CCDS DB by Protein ID:NP_060309Link to BLAST:NP_060309.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060309.2 544 Q7L5N7-1 544 100% 0 0

Chromosomal Locations for CCDS 10753.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 55509182 55509352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 55525508 55525647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 55528377 55528594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 55529835 55529947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 55531914 55531974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 55532824 55532882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 55534443 55534477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 55537578 55537632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 55545735 55545817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 55549277 55549402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 55550949 55551102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 55574631 55574729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 55579109 55579244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 55582914 55583098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1635 nt):
ATGAGCCGGTGCGCCCAGGCGGCGGAAGTGGCGGCCACAGTGCCAGGTGCCGGCGTCGGGAACGTGGGGC
TG
CGGCCGCCCATGGTGCCCCGTCAGGCGTCCTTCTTCCCGCCGCCGGTGCCGAACCCCTTCGTGCAGCA
G
ACGCAGATCGGCTCCGCGAGGCGGGTCCAGATTGTCCTTCTTGGGATTATCTTGCTTCCAATTCGTGTC
TTA
TTGGTTGCGTTAATTTTATTACTTGCATGGCCATTTGCTGCAATTTCAACAGTATGCTGTCCTGAAA
AG
CTGACCCACCCAATAACTGGTTGGAGGAGGAAAATTACTCAAACAGCTTTGAAATTTCTGGGTCGTGC
T
ATGTTCTTTTCAATGGGATTTATAGTTGCTGTAAAAGGAAAGATTGCAAGTCCTTTGGAAGCACCAGTT
TTT
GTTGCTGCCCCTCATTCAACATTCTTTGATGGAATTGCCTGTGTTGTAGCTGGGTTACCTTCTATGG
TA
TCTCGAAATGAGAATGCACAAGTCCCTCTGATTGGCAGACTGTTACGGGCTGTGCAACCAGTTTTGGT
G
TCCCGTGTAGATCCGGATTCCCGAAAAAACACAATAAATGAAATAATAAAGCGAACAACATCAGGAGGA
GAA
TGGCCCCAGATACTAGTTTTCCCAGAAGGTACTTGTACTAATCGTTCCTGTTTGATTACTTTTAAAC
CA
GGAGCCTTCATTCCAGGAGTTCCAGTGCAGCCAGTCCTCCTCAGATACCCAAACAAGCTGGATACTGT
G
ACCTGGACATGGCAAGGATATACATTCATTCAGCTTTGTATGCTTACTTTCTGCCAGCTCTTCACAAAG
GTA
GAAGTTGAGTTTATGCCAGTTCAAGTACCAAATGATGAAGAAAAAAATGATCCTGTCCTTTTTGCCA
AT
AAAGTCCGGAATTTAATGGCAGAAGCTCTGGGAATACCAGTAACAGATCATACCTATGAAGACTGCAG
A
TTGATGATTTCAGCAGGACAGCTAACATTGCCTATGGAAGCTGGGCTGGTGGAATTTACTAAAATTAGC
CGA
AAATTGAAATTAGATTGGGATGGTGTTCGTAAGCATTTGGATGAATATGCATCTATTGCGAGTTCCT
CA
AAAGGAGGAAGAATTGGAATTGAAGAATTCGCCAAGTATTTAAAGTTGCCTGTTTCAGATGTCTTGAG
A
CAACTTTTTGCACTCTTTGACAGGAACCATGATGGCAGCATTGACTTCCGAGAGTATGTGATTGGCCTG
GCT
GTCTTGTGCAACCCTTCCAACACAGAGGAGATCATCCAGGTGGCATTTAAGCTGTTTGACGTTGATG
AG
GATGGCTACATAACGGAGGAAGAGTTCTCCACCATTCTACAGGCTTCCCTTGGAGTGCCTGACCTTGA
T
GTTTCTGGTCTCTTCAAGGAAATAGCCCAAGGGGACTCAATTTCCTATGAGGAATTTAAAAGTTTTGCC
TTA
AAGCATCCAGAATATGCTAAGATATTTACAACATACCTAGACCTCCAGACGTGCCATGTGTTTTCAT
TA
CCAAAAGAAGTCCAGACAACCCCCTCCACCGCCAGTAATAAAGTCAGCCCTGAAAAGCATGAAGAGAG
T
ACCTCAGACAAAAAAGATGACTGA


Translation (544 aa):
MSRCAQAAEVAATVPGAGVGNVGLRPPMVPRQASFFPPPVPNPFVQQTQIGSARRVQIVLLGIILLPIRV
L
LVALILLLAWPFAAISTVCCPEKLTHPITGWR
RKITQTALKFLGRAMFFSMGFIVAVKGKIASPLEAPV
F
VAAPHSTFFDGIACVVAGLPSMVSRNENAQVPLIG
RLLRAVQPVLVSRVDPDSRKNTINEIIKRTTSGG
E
WPQ
ILVFPEGTCTNRSCLITFKPGAFIPGVPVQPVLLRYPNKLDTVTWTWQGYTFIQLCMLTFCQLFTK
V
EVE
FMPVQVPNDEEKNDPVLFANKVRNLMAEALGIPVTDHTYEDCRLMISAGQLTLPMEAGLVEFTKIS
R
KL
KLDWDGVRKHLDEYASIASSSKGGRIGIEEFAKYLKLPVSDVLRQLFALFDRNHDGSIDFREYVIGL
A
VLCNPSNTEEIIQVAFK
LFDVDEDGYITEEEFSTILQASLGVPDLDVSGLFKEIAQGDSISYEEFKSFA
L
KHPEYAKIFTTYLDLQTCHVFSLPKEVQTTPSTASNKVSPEKHEESTSDKKDD




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser